RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 RFX4Q33E94 735 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ZFP69Q49AA0 526 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MCMDC2Q4G0Z9 681 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TCP11X2Q5H9J9 407 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TJAP1Q5JTD0 557 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TCEAL6Q6IPX3 200 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 APOA5Q6Q788 366 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PACS1Q6VY07 963 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ARPINQ7Z6K5 226 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 NLRP10Q86W26 655 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SFR1Q86XK3 245 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 LEMD2Q8NC56 503 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 C15orf40Q8WUR7 153 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 POF1BQ8WVV4 589 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ATXN2LQ8WWM7 1075 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 NCLNQ969V3 563 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MAGOHBQ96A72 148 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 MS4A14Q96JA4 679 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 AGBL1Q96MI9 1066 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PFDN5Q99471 154 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SENP7Q9BQF6 1050 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SGIP1Q9BQI5 828 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MAGEB5Q9BZ81 275 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SERHL2Q9H4I8 314 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 RERGLQ9H628 205 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SYTL2Q9HCH5 934 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SERHLQ9NQF3 203 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 NLRP2Q9NX02 1062 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TMCC3Q9ULS5 477 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SPATA2Q9UM82 520 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.73□□□□□ -1.81
USP53-205ENST00000509769 STARD13Q9Y3M8 1113 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TEX51A0A1B0GUA7 166 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 HAT1O14929 419 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TSPAN1O60635 241 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 REM1O75628 298 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 RPS17P08708 135 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 MYBL1P10243 752 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 THRAP10827 490 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PCP11498 1178 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 ITIH1P19827 911 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 OGNP20774 298 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 ATP6V1C1P21283 382 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 LBX1P52954 281 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MRPS10P82664 201 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 TMPRSS15P98073 1019 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 DGKZQ13574 1117 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 RHEBQ15382 184 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TRIP10Q15642 601 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 P3H1Q32P28 736 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 KMT5BQ4FZB7 885 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 BOLA3Q53S33 107 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CCSAPQ6IQ19 270 aaPredicted RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 EIF3MQ7L2H7 374 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 C16orf62Q7Z3J2 963 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SPATA6LQ8N4H0 392 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 NGDNQ8NEJ9 315 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 TEX47Q8TBZ9 253 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CAPSLQ8WWF8 208 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CKAP2Q8WWK9 683 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 KRT35Q92764 455 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 VPS33AQ96AX1 596 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ZBTB9Q96C00 473 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TMCO6Q96DC7 493 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 VCPIP1Q96JH7 1222 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 AK8Q96MA6 479 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TCEANC2Q96MN5 208 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SERPINB12Q96P63 405 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 C9orf16Q9BUW7 83 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PAIP1Q9H074 479 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 ZCWPW1Q9H0M4 648 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MBIPQ9NS73 344 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SETD4Q9NVD3 440 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MTMR10Q9NXD2 777 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 RRN3Q9NYV6 651 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MED11Q9P086 117 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MALT1Q9UDY8 824 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ABCG2Q9UNQ0 655 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CRB1P82279 1406 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SYNJ2BP-COX16A0A087WUM0 186 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 A0A0X1KG70 313 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 RAB19A4D1S5 217 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 NOTOA8MTQ0 251 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 BTBD19C9JJ37 291 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TRIM66O15016 1216 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FOXN1O15353 648 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SIN3BO75182 1162 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 IFNA14P01570 189 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PRG2P13727 222 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 LSP1P33241 339 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 GGCXP38435 758 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 IRAK1P51617 712 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 RAB5BP61020 215 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 POLR2FP61218 127 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 TFAMQ00059 246 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 PDE4DQ08499 809 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 GARNL3Q5VVW2 1013 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SLFN12LQ6IEE8 588 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 HEATR4Q86WZ0 1026 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CYP4Z2PQ8N1L4 340 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms