RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 TRIM49P0CI25 452 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 TRIM49CP0CI26 452 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 HOXA9P31269 272 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 OR1D2P34982 312 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 GCLMP48507 274 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 DLG4P78352 724 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 PLD1Q13393 1074 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 SMAD4Q13485 552 aaKnown RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 KCNC3Q14003 757 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 MAPRE1Q15691 268 aaKnown RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 NFE2Q16621 373 aaPredicted RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 WSCD1Q658N2 575 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 ANKRD54Q6NXT1 300 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 C15orf39Q6ZRI6 1047 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 DCP1BQ8IZD4 617 aaKnown RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 ADGRF2Q8IZF7 708 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 TMEM130Q8N3G9 435 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 PDCL2Q8N4E4 241 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 SMRP1Q8NCR6 262 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 CMASQ8NFW8 434 aaPredicted RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 ENOX1Q8TC92 643 aaKnown RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 SLC22A17Q8WUG5 538 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 RIPOR3Q96MK2 946 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 NECTIN4Q96NY8 510 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 CLSTN3Q9BQT9 956 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 RHOBTB2Q9BYZ6 727 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 SNX25Q9H3E2 840 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 MMRN2Q9H8L6 949 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 MAN1C1Q9NR34 630 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 TMEM63CQ9P1W3 806 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 HSFX1Q9UBD0 423 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 AFF4Q9UHB7 1163 aaKnown RBP9.8□□□□□ -0.84
NUP54-207ENST00000508583 FBXL5Q9UKA1 691 aa9.8□□□□□ -0.84
NUP54-207ENST00000508583 PRRG1O14668 218 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 TGM5O43548 720 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 TBC1D4O60343 1298 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 XYLBO75191 536 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 TBX10O75333 385 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 GLP2RO95838 553 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 ASS1P00966 412 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 HLA-DRAP01903 254 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 POU2F2P09086 479 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 ATF2P15336 505 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 RPL17P18621 184 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 IGFBP6P24592 240 aaPredicted RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 GTF2F1P35269 517 aaKnown RBP eCLIP9.79□□□□□ -0.84
NUP54-207ENST00000508583 MTHFRP42898 656 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 MYL6P60660 151 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 YWHAEP62258 255 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 NOP14P78316 857 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 ROR1Q01973 937 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 PPP3CAQ08209 521 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 GPR17Q13304 367 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 PPM1LQ5SGD2 360 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 PALB2Q86YC2 1186 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 CREBRFQ8IUR6 639 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 GLYCTKQ8IVS8 523 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.79□□□□□ -0.84
NUP54-207ENST00000508583 ELMOD1Q8N336 334 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 KREMEN2Q8NCW0 462 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 PLEKHO2Q8TD55 490 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 ZNF516Q92618 1163 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 SLC35C1Q96A29 364 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 MSLNLQ96KJ4 702 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 TNIP3Q96KP6 325 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 CNOT6LQ96LI5 555 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 FAM81BQ96LP2 452 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 ACBD6Q9BR61 282 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 GZF1Q9H116 711 aaPredicted RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 XYLT2Q9H1B5 865 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 ADAM7Q9H2U9 754 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 CYP3A43Q9HB55 503 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 RAB20Q9NX57 234 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 DDX43Q9NXZ2 648 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 NXF1Q9UBU9 619 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 FBXW11Q9UKB1 542 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 BARX2Q9UMQ3 279 aaPredicted RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 L1RE1Q9UN81 338 aa9.79□□□□□ -0.84
NUP54-207ENST00000508583 TIMM13Q9Y5L4 95 aaPredicted RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 MTCL1Q9Y4B5 1905 aaKnown RBP9.79□□□□□ -0.84
NUP54-207ENST00000508583 TSC2P49815 1807 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 H3BQ06 376 aaPredicted RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 GABRDO14764 452 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 LINC01565O15544 149 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 ABLIM3O94929 683 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 CST3P01034 146 aaPredicted RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 LRG1P02750 347 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 AFPP02771 609 aaKnown RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 C8AP07357 584 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 EPCAMP16422 314 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 WARSP23381 471 aaKnown RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 TBXAS1P24557 533 aaPredicted RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 EEF1GP26641 437 aaKnown RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 MTIF2P46199 727 aaKnown RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 FMO5P49326 533 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 TUFMP49411 452 aaKnown RBP9.78□□□□□ -0.84
NUP54-207ENST00000508583 ARPP19P56211 112 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 TPM4P67936 248 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 MYL5Q02045 173 aa9.78□□□□□ -0.84
NUP54-207ENST00000508583 TYRO3Q06418 890 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms