RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 NCAPHQ15003 741 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 IQCB1Q15051 598 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 RSPO4Q2I0M5 234 aaPredicted RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 ZACNQ401N2 412 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 CDKAL1Q5VV42 579 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 KRT39Q6A163 491 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 SV2AQ7L0J3 742 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 LUZP1Q86V48 1076 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 C3orf58Q8NDZ4 430 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 ANKRD20A12PQ8NF67 263 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 ANP32EQ9BTT0 268 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 CLEC1BQ9P126 229 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 SIX4Q9UIU6 781 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 ATG2AQ2TAZ0 1938 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 ASH1LQ9NR48 2969 aaKnown RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 SF3B1O75533 1304 aaKnown RBP eCLIP10.79□□□□□ -0.682e-6■■■■■ 120.6
NUP54-203ENST00000504173 PES1O00541 588 aaKnown RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 PIRO00625 290 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 LINC01565O15544 149 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 TRAPPC3O43617 180 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 CSPG5O95196 566 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 HLA-DRAP01903 254 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 AFPP02771 609 aaKnown RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 TPM2P07951 284 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 CDK11BP21127 795 aaKnown RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 SDHBP21912 280 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 PAX3P23760 479 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 IGFBP6P24592 240 aaPredicted RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 BRCC3P46736 316 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 FMO5P49326 533 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 MYL7Q01449 175 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 KCNH2Q12809 1159 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 ELAVL2Q12926 359 aaKnown RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 MYO1EQ12965 1108 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 NCOA4Q13772 614 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 MAN2A1Q16706 1144 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 SV2CQ496J9 727 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 CBWD6Q4V339 395 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 TCP11X2Q5H9J9 407 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 CBWD3Q5JTY5 395 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 CBWD5Q5RIA9 395 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 KIAA0319Q5VV43 1072 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 FUT10Q6P4F1 479 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 DSTYKQ6XUX3 929 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 C15orf39Q6ZRI6 1047 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 DDX53Q86TM3 631 aaKnown RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 UBALD2Q8IYN6 164 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 LRRC52Q8N7C0 313 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 CXorf38Q8TB03 319 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 HPDLQ96IR7 371 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 TUBGCP2Q9BSJ2 902 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 TAB2Q9NYJ8 693 aa10.78□□□□□ -0.68
NUP54-203ENST00000504173 PUF60Q9UHX1 559 aaKnown RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 USP15Q9Y4E8 981 aaPredicted RBP10.78□□□□□ -0.68
NUP54-203ENST00000504173 I3L4J1 428 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 GRM6O15303 877 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 VNN1O95497 513 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 CST3P01034 146 aaPredicted RBP10.77□□□□□ -0.69
NUP54-203ENST00000504173 ADRB1P08588 477 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 ZNF18P17022 549 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 GTF2F1P35269 517 aaKnown RBP eCLIP10.77□□□□□ -0.69
NUP54-203ENST00000504173 NDUFV1P49821 464 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 LILRA4P59901 499 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 MYL6P60660 151 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 UBE3AQ05086 875 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 CETN1Q12798 172 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 KRT31Q15323 416 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 FAM171A1Q5VUB5 890 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 SCARA3Q6AZY7 606 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 CD300LGQ6UXG3 332 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 VPS52Q8N1B4 723 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 CCDC150Q8NCX0 1101 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 SPPL3Q8TCT6 385 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 TAS1R2Q8TE23 839 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 POF1BQ8WVV4 589 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 RPGRIP1Q96KN7 1286 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 SUSD3Q96L08 255 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 HERC2P3Q9BVR0 1158 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 VN1R3Q9BXE9 311 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 GPR62Q9BZJ7 368 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 IMPG2Q9BZV3 1241 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 STK39Q9UEW8 545 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 LZTS1Q9Y250 596 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 SCN1AP35498 2009 aa10.77□□□□□ -0.69
NUP54-203ENST00000504173 PLXNA4Q9HCM2 1894 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 ZZEF1O43149 2961 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 ARHGEF37A1IGU5 675 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 KPNA7A9QM74 516 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 CYB561D2O14569 222 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 SYN3O14994 580 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 SPTLC1O15269 473 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 P4HA2O15460 535 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 SOD2P04179 222 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 URODP06132 367 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 ATP1A3P13637 1013 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 ATICP31939 592 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 CA8P35219 290 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 AARSP49588 968 aaKnown RBP eCLIP10.76□□□□□ -0.69
NUP54-203ENST00000504173 TNNC1P63316 161 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 BMS1Q14692 1282 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms