RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ABRAQ8N0Z2 381 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 C4orf33Q8N1A6 199 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 GLIS1Q8NBF1 620 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 PGM2Q96G03 612 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 OTUD5Q96G74 571 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 TGS1Q96RS0 853 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 KDM4CQ9H3R0 1056 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 STYXL1Q9Y6J8 313 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 SNX3O60493 162 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 ZC3H11AO75152 810 aaKnown RBP eCLIP17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 ANP32DO95626 131 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 ZNF449Q6P9G9 518 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 VSTM1Q6UX27 236 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 PIGWQ7Z7B1 504 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 THNSL1Q8IYQ7 743 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 FITM2Q8N6M3 262 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 COPS5Q92905 334 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 CGRRF1Q99675 332 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 KIAA1586Q9HCI6 787 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 ALG13Q9NP73 1137 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 SLCO1B3Q9NPD5 702 aa17.5■□□□□ 0.39
CCDC88B-210ENST00000494566 AGTP01019 485 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 NCALDP61601 193 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 DNAJC3Q13217 504 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 TXNRD3NBQ6F5E7 133 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 LBX2Q6XYB7 198 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 RNF149Q8NC42 400 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 CLMNQ96JQ2 1002 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 DCLK3Q9C098 648 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 ELP3Q9H9T3 547 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 ADGRA2Q96PE1 1338 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 H0Y3Z8 333 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 PROSCO94903 275 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 PLCB4Q15147 1175 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 CYP4A22Q5TCH4 519 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 TRIM68Q6AZZ1 485 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 ERICH1Q86X53 443 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 ZNF606Q8WXB4 792 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 MCM3APO60318 1980 aa17.49■□□□□ 0.39
CCDC88B-210ENST00000494566 CEP350Q5VT06 3117 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 H0YCG3 227 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 IRF6O14896 467 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 B4GALT5O43286 388 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 ADCY3O60266 1144 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 NEBLO76041 1014 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 RARGP13631 454 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 TFAMQ00059 246 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 AVENQ9NQS1 362 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 ANAPC5Q9UJX4 755 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 MGRN1O60291 552 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 STAM2O75886 525 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 DDNO94850 711 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 ATF7P17544 494 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 PEX19P40855 299 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 FASTKD3Q14CZ7 662 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 LACTB2Q53H82 288 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 C12orf50Q8NA57 414 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 NLRP4Q96MN2 994 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 SPATC1LQ9H0A9 340 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 TJP2Q9UDY2 1190 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 USP15Q9Y4E8 981 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 ICAM3P32942 547 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 RAP1GAPP47736 663 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 PTP4A2Q12974 167 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 TARBP2Q15633 366 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 LIN9Q5TKA1 542 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 SLFN12LQ6IEE8 588 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 TAOK1Q7L7X3 1001 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 RHPN2Q8IUC4 686 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 TMEM192Q8IY95 271 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 DNERQ8NFT8 737 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 MCEEQ96PE7 176 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 KLF6Q99612 283 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 PARP2Q9UGN5 583 aa17.48■□□□□ 0.39
CCDC88B-210ENST00000494566 F8VP50 259 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 IVDP26440 423 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 BPIFB4P59827 614 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 CHST13Q8NET6 341 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 PLVAPQ9BX97 442 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 NIFKQ9BYG3 293 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 IGKV6D-21A0A0A0MT36 114 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 GOLGA8RI6L899 631 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 MSCO60682 206 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 ATF2P15336 505 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 TARSP26639 723 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 MGAT5Q09328 741 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 TMEM132AQ24JP5 1023 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 ZNF677Q86XU0 584 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 FBXO16Q8IX29 292 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 OSBPL8Q9BZF1 889 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 TXNRD2Q9NNW7 524 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 NRBP2Q9NSY0 501 aa17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 NXF1Q9UBU9 619 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88B-210ENST00000494566 DNAJC8O75937 253 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-210ENST00000494566 IFNB1P01574 187 aa17.46■□□□□ 0.39
CCDC88B-210ENST00000494566 NQO1P15559 274 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-210ENST00000494566 FOXN2P32314 431 aa17.46■□□□□ 0.39
CCDC88B-210ENST00000494566 OGDHQ02218 1023 aa17.46■□□□□ 0.39
CCDC88B-210ENST00000494566 LAMTOR4Q0VGL1 99 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms