RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 LARP4BQ92615 738 aaKnown RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 RAD54LQ92698 747 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 PSMG2Q969U7 264 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 HVCN1Q96D96 273 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 RMDN1Q96DB5 314 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 SENP8Q96LD8 212 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 SEPT5Q99719 369 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 LMAN1LQ9HAT1 526 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 SEL1LQ9UBV2 794 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 USP18Q9UMW8 372 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 TIMM13Q9Y5L4 95 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 CITO14578 2027 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 CACNA1AO00555 2505 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 TULP1O00294 542 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-213ENST00000493475 IL18RAPO95256 599 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 GABRR2P28476 465 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 TNFSF9P41273 254 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 VIPR2P41587 438 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 CCR2P41597 374 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 TSPY1Q01534 308 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 GSE1Q14687 1217 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 MGAT5BQ3V5L5 792 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 SV2CQ496J9 727 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 C9orf57Q5W0N0 161 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 LAIR1Q6GTX8 287 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 JADE1Q6IE81 842 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 CENPPQ6IPU0 288 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 RALGPS2Q86X27 583 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-213ENST00000493475 HS6ST3Q8IZP7 471 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 SYNPOQ8N3V7 929 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 SPEM1Q8N4L4 309 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 SHKBP1Q8TBC3 707 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 SPPL2BQ8TCT7 592 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 CACTINQ8WUQ7 758 aaKnown RBP12.52□□□□□ -0.41
COL6A3-213ENST00000493475 POMGNT1Q8WZA1 660 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 KIF2CQ99661 725 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 STK17AQ9UEE5 414 aa12.52□□□□□ -0.41
COL6A3-213ENST00000493475 CPSF3Q9UKF6 684 aaKnown RBP12.52□□□□□ -0.41
COL6A3-213ENST00000493475 AGO2Q9UKV8 859 aaKnown RBP12.52□□□□□ -0.41
COL6A3-213ENST00000493475 NPHP3-ACAD11A0A0J9YXS1 232 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 MTMR11A4FU01 709 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 LILRB5O75023 590 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 LDHAP00338 332 aaKnown RBP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 CYP11A1P05108 521 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 ADRB2P07550 413 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 OR4Q2P0C623 313 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 GJA1P17302 382 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 GAP43P17677 238 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 PLCG1P19174 1290 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 CCNE1P24864 410 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 DDX6P26196 483 aaKnown RBP eCLIP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 DDIT3P35638 169 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 AVPR1AP37288 418 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 PSEN1P49768 467 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 GTF2BQ00403 316 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 FCHO2Q0JRZ9 810 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 ALCAMQ13740 583 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 NFE2Q16621 373 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 C8orf34Q49A92 452 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 SLC39A12Q504Y0 691 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 ARSHQ5FYA8 562 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 GPR158Q5T848 1215 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 CC2D1AQ6P1N0 951 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 STXBP4Q6ZWJ1 553 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 DNAJB7Q7Z6W7 309 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 ARID3BQ8IVW6 561 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 ZSWIM3Q96MP5 696 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 PYM1Q9BRP8 204 aaKnown RBP12.51□□□□□ -0.41
COL6A3-213ENST00000493475 ST6GALNAC4Q9H4F1 302 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 SLC27A5Q9Y2P5 690 aa12.51□□□□□ -0.41
COL6A3-213ENST00000493475 OTOGLQ3ZCN5 2332 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 VPS37CA5D8V6 355 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 CYB561D2O14569 222 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 LRP3O75074 770 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 ATG13O75143 517 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 WEE1P30291 646 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 BFSP1Q12934 665 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 MCM6Q14566 821 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 KARSQ15046 597 aaKnown RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 SF3A1Q15459 793 aaKnown RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 RSPO4Q2I0M5 234 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 TSSK4Q6SA08 328 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 PRR23BQ6ZRT6 265 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 SV2BQ7L1I2 683 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 SYCP3Q8IZU3 236 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 DCLK2Q8N568 766 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 ATAD1Q8NBU5 361 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 BPIFB1Q8TDL5 484 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 NELL1Q92832 810 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 CCSER1Q9C0I3 900 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 TASP1Q9H6P5 420 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 MRPL44Q9H9J2 332 aaKnown RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 KIF9Q9HAQ2 790 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 DPP3Q9NY33 737 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 DLL3Q9NYJ7 618 aa12.5□□□□□ -0.41
COL6A3-213ENST00000493475 UXTQ9UBK9 157 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-213ENST00000493475 SLC38A8A6NNN8 435 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 SOBPA7XYQ1 873 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 KPNA7A9QM74 516 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms