RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ARID3BQ8IVW6 561 aaPredicted RBP13.43□□□□□ -0.26
CPSF3-204ENST00000489403 YAF2Q8IY57 180 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 GPR161Q8N6U8 529 aaKnown RBP13.43□□□□□ -0.26
CPSF3-204ENST00000489403 CSGALNACT1Q8TDX6 532 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 LARP4BQ92615 738 aaKnown RBP13.43□□□□□ -0.26
CPSF3-204ENST00000489403 SECISBP2LQ93073 1101 aaKnown RBP13.43□□□□□ -0.26
CPSF3-204ENST00000489403 MSANTD3Q96H12 275 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 LRRC3BQ96PB8 259 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 LPIN3Q9BQK8 851 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 ATXN3LQ9H3M9 355 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 RBM12Q9NTZ6 932 aaKnown RBP13.43□□□□□ -0.26
CPSF3-204ENST00000489403 HSFX1Q9UBD0 423 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 SMC3Q9UQE7 1217 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 DERAQ9Y315 318 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 CACNA1AO00555 2505 aa13.43□□□□□ -0.26
CPSF3-204ENST00000489403 KIF26AQ9ULI4 1882 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-204ENST00000489403 TBCAO75347 108 aaKnown RBP13.42□□□□□ -0.26
CPSF3-204ENST00000489403 ATF6P18850 670 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 TGM1P22735 817 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 PAX3P23760 479 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 CDR1P51861 262 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 KPNA1P52294 538 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-204ENST00000489403 CYP4F8P98187 520 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 SF3A1Q15459 793 aaKnown RBP13.42□□□□□ -0.26
CPSF3-204ENST00000489403 SLC39A12Q504Y0 691 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 GPR158Q5T848 1215 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 TXNDC11Q6PKC3 985 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 RASSF8Q8NHQ8 419 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 ZFYVE19Q96K21 471 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 SEPT5Q99719 369 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-204ENST00000489403 ZCWPW1Q9H0M4 648 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 IKZF4Q9H2S9 585 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 ASB7Q9H672 318 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 C8orf33Q9H7E9 229 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-204ENST00000489403 PARD6AQ9NPB6 346 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 GMEB2Q9UKD1 530 aa13.42□□□□□ -0.26
CPSF3-204ENST00000489403 MYBPHLA2RUH7 354 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 SPECC1L-ADORA2AF8WAN1 911 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 DPYSL4O14531 572 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 PRAMEF12O95522 483 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 FGF19O95750 216 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 BMP15O95972 392 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 CTHP32929 405 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 ABCD1P33897 745 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 CXCL12P48061 93 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 TAF6P49848 677 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 DMWDQ09019 674 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 LRRC32Q14392 662 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 LPAL2Q16609 132 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 MGAT5BQ3V5L5 792 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 ARHGAP15Q53QZ3 475 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 LARP1BQ659C4 914 aaKnown RBP13.41□□□□□ -0.26
CPSF3-204ENST00000489403 ADALQ6DHV7 355 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 C1orf228Q6PIY5 440 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 Q6ZS52 159 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 ITIH5Q86UX2 942 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 EFCAB13Q8IY85 973 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 SPEM1Q8N4L4 309 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 TTC8Q8TAM2 541 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 PYM1Q9BRP8 204 aaKnown RBP13.41□□□□□ -0.26
CPSF3-204ENST00000489403 CCSER1Q9C0I3 900 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 ST6GALNAC4Q9H4F1 302 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 IL21Q9HBE4 155 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 OBP2AQ9NY56 170 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 GTSE1Q9NYZ3 720 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 AGO2Q9UKV8 859 aaKnown RBP13.41□□□□□ -0.26
CPSF3-204ENST00000489403 DSEQ9UL01 958 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 USP18Q9UMW8 372 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 C2CD2Q9Y426 696 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 STYXL1Q9Y6J8 313 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 DENND4CQ5VZ89 1909 aa13.41□□□□□ -0.26
CPSF3-204ENST00000489403 OBSL1O75147 1896 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 CYB561D2O14569 222 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 DDIT3P35638 169 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 TUFMP49411 452 aaKnown RBP13.4□□□□□ -0.26
CPSF3-204ENST00000489403 MCM2P49736 904 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 ATXN1P54253 815 aaKnown RBP13.4□□□□□ -0.26
CPSF3-204ENST00000489403 LMNB2Q03252 620 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 VEPH1Q14D04 833 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 ARHGAP29Q52LW3 1261 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 SLFN12LQ6IEE8 588 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 CRELD2Q6UXH1 353 aaPredicted RBP13.4□□□□□ -0.26
CPSF3-204ENST00000489403 USP49Q70CQ1 688 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 BRAPQ7Z569 592 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 LRRTM3Q86VH5 581 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 RALGPS2Q86X27 583 aaPredicted RBP13.4□□□□□ -0.26
CPSF3-204ENST00000489403 SFR1Q86XK3 245 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 CELF5Q8N6W0 485 aaKnown RBP13.4□□□□□ -0.26
CPSF3-204ENST00000489403 FAM200AQ8TCP9 573 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 BPIFB1Q8TDL5 484 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 TASP1Q9H6P5 420 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 DPP3Q9NY33 737 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 RAB23Q9ULC3 237 aa13.4□□□□□ -0.26
CPSF3-204ENST00000489403 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.4□□□□□ -0.26
CPSF3-204ENST00000489403 PRR5-ARHGAP8B1AHC4 643 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 CHURC1-FNTBB4DL54 471 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 K7ESF4 209 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 PPP1R37O75864 691 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 PAPSS2O95340 614 aaPredicted RBP13.39□□□□□ -0.27
CPSF3-204ENST00000489403 SDHBP21912 280 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms