RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 PDCL3Q9H2J4 239 aa10.05□□□□□ -0.8
SF3B1-211ENST00000487698 CNOT8Q9UFF9 292 aaKnown RBP10.05□□□□□ -0.8
SF3B1-211ENST00000487698 CHORDC1Q9UHD1 332 aaPredicted RBP10.05□□□□□ -0.8
SF3B1-211ENST00000487698 TSC2P49815 1807 aa10.05□□□□□ -0.8
SF3B1-211ENST00000487698 DNM1LO00429 736 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ITGA4P13612 1032 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ATF7P17544 494 aaPredicted RBP10.04□□□□□ -0.8
SF3B1-211ENST00000487698 MMP8P22894 467 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 RRM1P23921 792 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 CXCR5P32302 372 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 SSTR3P32745 418 aaPredicted RBP10.04□□□□□ -0.8
SF3B1-211ENST00000487698 CDK7P50613 346 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ITIH3Q06033 890 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 MBTPS1Q14703 1052 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 RPS6KA1Q15418 735 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 LIMS2Q7Z4I7 341 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 HACE1Q8IYU2 909 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 WDTC1Q8N5D0 677 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 UBXN4Q92575 508 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 GOLGA1Q92805 767 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 TMEM176AQ96HP8 235 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 RPGRIP1Q96KN7 1286 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ZNF560Q96MR9 790 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 PSMB7Q99436 277 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ZNF518BQ9C0D4 1074 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 LHX5Q9H2C1 402 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 GDAP2Q9NXN4 497 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 SPTLC1O15269 473 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 MED7O43513 233 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ZSCAN20P17040 1043 aaPredicted RBP10.04□□□□□ -0.8
SF3B1-211ENST00000487698 MLH1P40692 756 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 PNPLA4P41247 253 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 NDST1P52848 882 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ORC1Q13415 861 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 PLEKHA7Q6IQ23 1121 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 AGMOQ6ZNB7 445 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 MMS22LQ6ZRQ5 1243 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 C1orf131Q8NDD1 294 aaKnown RBP10.04□□□□□ -0.8
SF3B1-211ENST00000487698 RABGGTAQ92696 567 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 C11orf70Q9BRQ4 267 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 BEGAINQ9BUH8 593 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 GOLGA2P5Q9HBQ8 144 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 WBP1LQ9NX94 342 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 ADAM22Q9P0K1 906 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 RNF14Q9UBS8 474 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.04□□□□□ -0.8
SF3B1-211ENST00000487698 GIT1Q9Y2X7 761 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 SNX9Q9Y5X1 595 aa10.04□□□□□ -0.8
SF3B1-211ENST00000487698 A0A0U1RQF3 1178 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 TCRBV5S1A1TA0A578 114 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 ARL5CA6NH57 179 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 O00370 1275 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 DDX3YO15523 660 aaKnown RBP10.03□□□□□ -0.8
SF3B1-211ENST00000487698 CD19P15391 556 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 TAF6P49848 677 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 TUBB4BP68371 445 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 MTFR1Q15390 333 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 PTPROQ16827 1216 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 SOWAHAQ2M3V2 549 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 TEX35Q5T0J7 233 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 DENND1BQ6P3S1 775 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 NOA1Q8NC60 698 aaKnown RBP10.03□□□□□ -0.8
SF3B1-211ENST00000487698 TMEM35BQ8NCS4 154 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 UBE2Q2Q8WVN8 375 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 CD101Q93033 1021 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 LPPQ93052 612 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 RPS6KC1Q96S38 1066 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 GAD1Q99259 594 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 MRPL45Q9BRJ2 306 aaKnown RBP10.03□□□□□ -0.8
SF3B1-211ENST00000487698 SLC38A7Q9NVC3 462 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 AMFRQ9UKV5 643 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 OGDHLQ9ULD0 1010 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 NME7Q9Y5B8 376 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.03□□□□□ -0.8
SF3B1-211ENST00000487698 ALG6Q9Y672 507 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 KPNA7A9QM74 516 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 VDRP11473 427 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 AFF1P51825 1210 aaKnown RBP10.03□□□□□ -0.8
SF3B1-211ENST00000487698 MAMLD1Q13495 774 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 SV2CQ496J9 727 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 C2CD6Q53TS8 623 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 LIN9Q5TKA1 542 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 LLGL2Q6P1M3 1020 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 ZNF598Q86UK7 904 aaKnown RBP10.03□□□□□ -0.8
SF3B1-211ENST00000487698 UNC93AQ86WB7 457 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 FAM126BQ8IXS8 530 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 CAGE1Q8TC20 777 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 KBTBD7Q8WVZ9 684 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 PBKQ96KB5 322 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 ADAM2Q99965 735 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 NT5C1AQ9BXI3 368 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 MIOSQ9NXC5 875 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 EHD2Q9NZN4 543 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 CYTH4Q9UIA0 394 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 KIAA1257Q9ULG3 409 aa10.03□□□□□ -0.8
SF3B1-211ENST00000487698 MIF4GDA9UHW6 222 aaKnown RBP10.02□□□□□ -0.81
SF3B1-211ENST00000487698 KCNK3O14649 394 aa10.02□□□□□ -0.81
SF3B1-211ENST00000487698 INPPL1O15357 1258 aa10.02□□□□□ -0.81
SF3B1-211ENST00000487698 CALB1P05937 261 aa10.02□□□□□ -0.81
SF3B1-211ENST00000487698 CCL5P13501 91 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms