RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.14■□□□□ 0.01
CUX1-209ENST00000487284 SLFN11Q7Z7L1 901 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 GSTCDQ8NEC7 633 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 ARHGEF26Q96DR7 871 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 THAP2Q9H0W7 228 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 TMEM161AQ9NX61 479 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 HYOU1Q9Y4L1 999 aa15.14■□□□□ 0.01
CUX1-209ENST00000487284 PTPRSQ13332 1948 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 KRT19P08727 400 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 KCNE1P15382 129 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 TCP1P17987 556 aaKnown RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 NOP2P46087 812 aaKnown RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 SCNN1GP51170 649 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 GUCY2FP51841 1108 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 YWHAEP62258 255 aaKnown RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 FPGSQ05932 587 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 PPIGQ13427 754 aaKnown RBP eCLIP15.13■□□□□ 0.01
CUX1-209ENST00000487284 NAA30Q147X3 362 aaPredicted RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 ZBTB6Q15916 424 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 CLLU1OSQ5K130 101 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 MEI1Q5TIA1 1274 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 TRIM72Q6ZMU5 477 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 C16orf59Q7L2K0 433 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 RSRC2Q7L4I2 434 aaKnown RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 RHOT2Q8IXI1 618 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 SLC35G2Q8TBE7 412 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 C18orf25Q96B23 403 aaPredicted RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 CALR3Q96L12 384 aaKnown RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 RPS6KC1Q96S38 1066 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 ELAC1Q9H777 363 aaKnown RBP15.13■□□□□ 0.01
CUX1-209ENST00000487284 CISHQ9NSE2 258 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 MIOSQ9NXC5 875 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 DPP3Q9NY33 737 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 TUBGCP4Q9UGJ1 667 aa15.13■□□□□ 0.01
CUX1-209ENST00000487284 MTA2O94776 668 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 CALCAP01258 141 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 CYP1A1P04798 512 aaPredicted RBP15.12■□□□□ 0.01
CUX1-209ENST00000487284 FGFR1P11362 822 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 UNGP13051 313 aaPredicted RBP15.12■□□□□ 0.01
CUX1-209ENST00000487284 GNA15P30679 374 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 POLR2BP30876 1174 aaKnown RBP15.12■□□□□ 0.01
CUX1-209ENST00000487284 EPHB4P54760 987 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 GPC5P78333 572 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 ACAD10Q6JQN1 1059 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 CRIPAKQ8N1N5 446 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 TSPAN18Q96SJ8 248 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 OSBPL9Q96SU4 736 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 UBN1Q9NPG3 1134 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 POLIQ9UNA4 740 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 INPP5FQ9Y2H2 1132 aa15.12■□□□□ 0.01
CUX1-209ENST00000487284 FNDC1Q4ZHG4 1894 aaPredicted RBP15.12■□□□□ 0.01
CUX1-209ENST00000487284 ABHD14A-ACY1A0A1B0GW23 586 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 NCK2O43639 380 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 SRGAP2O75044 1071 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 FTCDO95954 541 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 RBP5P82980 135 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 CENPCQ03188 943 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 SOX4Q06945 474 aaPredicted RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 CKAP4Q07065 602 aaKnown RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 SCARA5Q6ZMJ2 495 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 OTOP2Q7RTS6 562 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 SYCE1Q8N0S2 351 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 ANKRD7Q92527 254 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 PPP1R10Q96QC0 940 aaKnown RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 FAM124BQ9H5Z6 455 aaPredicted RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 GOLGA2P5Q9HBQ8 144 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 OSGEPQ9NPF4 335 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.11■□□□□ 0.01
CUX1-209ENST00000487284 GTF3C4Q9UKN8 822 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 LRFN2Q9ULH4 789 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 UBQLN1Q9UMX0 589 aaKnown RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 AGAP1Q9UPQ3 857 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 PCDHB7Q9Y5E2 793 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 V9GYY5 206 aaPredicted RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 THAP12O43422 761 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 UPP2O95045 317 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 POMCP01189 267 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 CYP1A2P05177 515 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 WEE2P0C1S8 567 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 CD58P19256 250 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 GATMP50440 423 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 WDR5P61964 334 aaKnown RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 NOMO3P69849 1222 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 DEFB103AP81534 67 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 ERCC6LQ2NKX8 1250 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 WDR72Q3MJ13 1102 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 GLB1LQ6UWU2 654 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 ZNF365Q70YC5 407 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 NPAS4Q8IUM7 802 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 BEST2Q8NFU1 509 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 UBXN4Q92575 508 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 GOLGA1Q92805 767 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 HPDLQ96IR7 371 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 CYP3A43Q9HB55 503 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 ABCB6Q9NP58 842 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 NXF1Q9UBU9 619 aaKnown RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 PUF60Q9UHX1 559 aaKnown RBP15.11■□□□□ 0.01
CUX1-209ENST00000487284 COG5Q9UP83 839 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 STXBP5LQ9Y2K9 1186 aa15.11■□□□□ 0.01
CUX1-209ENST00000487284 CTAGE15A4D2H0 777 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms