RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TPGS2Q68CL5 300 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 HFE2Q6ZVN8 426 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 NT5DC4Q86YG4 428 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 PBXIP1Q96AQ6 731 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 C18orf25Q96B23 403 aaPredicted RBP18.35■□□□□ 0.53
VIM-205ENST00000485947 KIF12Q96FN5 646 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 IFNKQ9P0W0 207 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 LIMD1Q9UGP4 676 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 C2CD2Q9Y426 696 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 CDY1Q9Y6F8 540 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 CACNA1AO00555 2505 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 TECTAO75443 2155 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 MTCL1Q9Y4B5 1905 aaKnown RBP18.34■□□□□ 0.53
VIM-205ENST00000485947 LACTBL1A8MY62 500 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 M0QZQ0 153 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 CLIC2O15247 247 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 ABLIM3O94929 683 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 SPATA31D3P0C874 917 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 GARTP22102 1010 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 BRCC3P46736 316 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 AARSP49588 968 aaKnown RBP eCLIP18.34■□□□□ 0.53
VIM-205ENST00000485947 NUBP1P53384 320 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 CCDC40Q4G0X9 1142 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 SEZ6Q53EL9 994 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 VARS2Q5ST30 1063 aaKnown RBP18.34■□□□□ 0.53
VIM-205ENST00000485947 ARMCX5Q6P1M9 558 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 SLC39A4Q6P5W5 647 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 SPATA31D4Q6ZUB0 917 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 APTXQ7Z2E3 356 aaKnown RBP18.34■□□□□ 0.53
VIM-205ENST00000485947 GLYCTKQ8IVS8 523 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 BEST2Q8NFU1 509 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 ASIC4Q96FT7 647 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 PDLIM2Q96JY6 352 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 METTL14Q9HCE5 456 aaKnown RBP18.34■□□□□ 0.53
VIM-205ENST00000485947 AGO2Q9UKV8 859 aaKnown RBP18.34■□□□□ 0.53
VIM-205ENST00000485947 PCDHB8Q9UN66 801 aa18.34■□□□□ 0.53
VIM-205ENST00000485947 A0A1B0GTH6 734 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 MAPK13O15264 365 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 LDHAP00338 332 aaKnown RBP18.33■□□□□ 0.52
VIM-205ENST00000485947 EPB41P11171 864 aaKnown RBP18.33■□□□□ 0.52
VIM-205ENST00000485947 SP100P23497 879 aaPredicted RBP18.33■□□□□ 0.52
VIM-205ENST00000485947 TNFSF9P41273 254 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 MTIF2P46199 727 aaKnown RBP18.33■□□□□ 0.52
VIM-205ENST00000485947 TDGQ13569 410 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 ZNF280DQ6N043 979 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 FRMD5Q7Z6J6 570 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 SUGP1Q8IWZ8 645 aaKnown RBP18.33■□□□□ 0.52
VIM-205ENST00000485947 FBXL6Q8N531 539 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 XPO4Q9C0E2 1151 aaKnown RBP18.33■□□□□ 0.52
VIM-205ENST00000485947 FRMD4BQ9Y2L6 1034 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 TRIP11Q15643 1979 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 DENND4AQ7Z401 1863 aa18.33■□□□□ 0.52
VIM-205ENST00000485947 ADAM12O43184 909 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 OAZ2O95190 189 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 IL18RAPO95256 599 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 PRKCSHP14314 528 aaPredicted RBP18.32■□□□□ 0.52
VIM-205ENST00000485947 ATF2P15336 505 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 IGFBP6P24592 240 aaPredicted RBP18.32■□□□□ 0.52
VIM-205ENST00000485947 ELF1P32519 619 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 PSMC2P35998 433 aaKnown RBP18.32■□□□□ 0.52
VIM-205ENST00000485947 COPB1P53618 953 aaKnown RBP18.32■□□□□ 0.52
VIM-205ENST00000485947 TCEAL8Q8IYN2 117 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 XXYLT1Q8NBI6 393 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 POMGNT1Q8WZA1 660 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 PPP1R9BQ96SB3 815 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 PHOX2BQ99453 314 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 TUBGCP2Q9BSJ2 902 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 AVENQ9NQS1 362 aaPredicted RBP18.32■□□□□ 0.52
VIM-205ENST00000485947 TUBGCP4Q9UGJ1 667 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 C5orf42Q9H799 3197 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 PLXNA3P51805 1871 aa18.32■□□□□ 0.52
VIM-205ENST00000485947 SPTBN4Q9H254 2564 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 ANKRD63C9JTQ0 380 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 I3L4J1 428 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 EXOC3O60645 756 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 TYMPP19971 482 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 GBP2P32456 591 aaPredicted RBP18.31■□□□□ 0.52
VIM-205ENST00000485947 DEKP35659 375 aaKnown RBP18.31■□□□□ 0.52
VIM-205ENST00000485947 CYP2J2P51589 502 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 ROR1Q01973 937 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 TMEM132DQ14C87 1099 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 MAN2A1Q16706 1144 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 CTXN3Q4LDR2 81 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 CEP135Q66GS9 1140 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 SLC7A14Q8TBB6 771 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 IKZF4Q9H2S9 585 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 KCNK12Q9HB15 430 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 KIAA1586Q9HCI6 787 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 RTN4Q9NQC3 1192 aaKnown RBP18.31■□□□□ 0.52
VIM-205ENST00000485947 TAB2Q9NYJ8 693 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 HSPBP1Q9NZL4 362 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 FBXL5Q9UKA1 691 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 CACNA1HO95180 2353 aa18.31■□□□□ 0.52
VIM-205ENST00000485947 VWA8A3KMH1 1905 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 AKAP3O75969 853 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 LAMP2P13473 410 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 FSHRP23945 695 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 ADSSP30520 456 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 YWHAHQ04917 246 aaPredicted RBP18.3■□□□□ 0.52
VIM-205ENST00000485947 ZBTB41Q5SVQ8 909 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms