RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 IL1R1P14778 569 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 VCAM1P19320 739 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 BGNP21810 368 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 CTCFP49711 727 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 ORC2Q13416 577 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 TKFCQ3LXA3 575 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 ZBTB41Q5SVQ8 909 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 GADL1Q6ZQY3 521 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RNF168Q8IYW5 571 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 LRRC43Q8N309 656 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RNF148Q8N7C7 305 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 MCUQ8NE86 351 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 POLR3CQ9BUI4 534 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 ADAM7Q9H2U9 754 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 XPO7Q9UIA9 1087 aaKnown RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 ATF5Q9Y2D1 282 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 PCDHA10Q9Y5I2 948 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 NR2E3Q9Y5X4 410 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 MYH3P11055 1940 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 EDIL3O43854 480 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 ZBED1O96006 694 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 PGM1P36871 562 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 EIF3EP60228 445 aaKnown RBP11.25□□□□□ -0.61
CHD3-208ENST00000470531 PRKCEQ02156 737 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 GAD2Q05329 585 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 CCDC125Q86Z20 511 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 SPATA18Q8TC71 538 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 ACTL9Q8TC94 416 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 WRNIP1Q96S55 665 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 HSD17B14Q9BPX1 270 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 SEL1LQ9UBV2 794 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 UBE4BO95155 1302 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 KCNN4O15554 427 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 STK10O94804 968 aaKnown RBP11.25□□□□□ -0.61
CHD3-208ENST00000470531 KRT3P12035 628 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 CRADDP78560 199 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 ALCAMQ13740 583 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 ZNF699Q32M78 642 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 ZDHHC24Q6UX98 284 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 TRMT10CQ7L0Y3 403 aaKnown RBP11.25□□□□□ -0.61
CHD3-208ENST00000470531 SH3BP5LQ7L8J4 393 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 PCGF5Q86SE9 256 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 COL23A1Q86Y22 540 aaPredicted RBP11.25□□□□□ -0.61
CHD3-208ENST00000470531 MCF2L2Q86YR7 1114 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 TMEM130Q8N3G9 435 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 C3orf20Q8ND61 904 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 FBXO36Q8NEA4 188 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 TLCD1Q96CP7 247 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 MECRQ9BV79 373 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 VCXQ9H320 206 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 AKT3Q9Y243 479 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 PCDHA2Q9Y5H9 948 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 COL4A1P02462 1669 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 M0QYV0 167 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 NR3C2P08235 984 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 SERPINB3P29508 390 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 PRKCIP41743 596 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 PHKA2P46019 1235 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 RPS6KA3P51812 740 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 ARL4CP56559 192 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 BPIFB4P59827 614 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 OTUD4Q01804 1114 aaKnown RBP11.25□□□□□ -0.61
CHD3-208ENST00000470531 CES3Q6UWW8 571 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 GSDMBQ8TAX9 411 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 TRAPPC12Q8WVT3 735 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 RNF34Q969K3 372 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 TSSK1BQ9BXA7 367 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 FAM49AQ9H0Q0 323 aaPredicted RBP11.25□□□□□ -0.61
CHD3-208ENST00000470531 EPB41L4BQ9H329 900 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 OLFML3Q9NRN5 406 aa11.25□□□□□ -0.61
CHD3-208ENST00000470531 UMODL1Q5DID0 1318 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 ASNSP08243 561 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 MIS18BP1Q6P0N0 1132 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 DNAAF3Q8N9W5 541 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 SMC1BQ8NDV3 1235 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 TCP10LQ8TDR4 215 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 SENP7Q9BQF6 1050 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 GRHL1Q9NZI5 618 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 IL1RAPL1Q9NZN1 696 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 VAV3Q9UKW4 847 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 SLC12A4Q9UP95 1085 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 DIS3Q9Y2L1 958 aaKnown RBP11.24□□□□□ -0.61
CHD3-208ENST00000470531 STK24Q9Y6E0 443 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 RPS6KL1Q9Y6S9 549 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 CASZ1Q86V15 1759 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 PRRC2BQ5JSZ5 2229 aaKnown RBP11.24□□□□□ -0.61
CHD3-208ENST00000470531 SLIT2O94813 1529 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 ZMPSTE24O75844 475 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 FAM155BO75949 473 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 TNNC2P02585 160 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 OATP04181 439 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 PYGBP11216 843 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 MSX2P35548 267 aaPredicted RBP11.24□□□□□ -0.61
CHD3-208ENST00000470531 NPNTQ6UXI9 565 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 GBP7Q8N8V2 638 aaPredicted RBP11.24□□□□□ -0.61
CHD3-208ENST00000470531 TMEM35BQ8NCS4 154 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 PPP4R1Q8TF05 950 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 SCYL1Q96KG9 808 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 ADPGKQ9BRR6 497 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 PCDHB2Q9Y5E7 798 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms