RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 COQ4Q9Y3A0 265 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 NFE2L3Q9Y4A8 694 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 ANK1P16157 1881 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 PDCD11Q14690 1871 aaKnown RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 GABRDO14764 452 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 P4HA2O15460 535 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 TBX10O75333 385 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 TACC1O75410 805 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 CLSTN1O94985 981 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 AFPP02771 609 aaKnown RBP12.81□□□□□ -0.36
VPS13D-204ENST00000469054 KCNA5P22460 613 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 FMO5P49326 533 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ARPP19P56211 112 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ROR1Q01973 937 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ZSCAN23Q3MJ62 389 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 SPOPLQ6IQ16 392 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ANKRD54Q6NXT1 300 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 OSTM1Q86WC4 334 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ADGRF2Q8IZF7 708 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ZNF461Q8TAF7 563 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 SEMA4DQ92854 862 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 ELMO3Q96BJ8 720 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 RTP3Q9BQQ7 232 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 APOBEC3GQ9HC16 384 aaKnown RBP12.81□□□□□ -0.36
VPS13D-204ENST00000469054 DDX43Q9NXZ2 648 aaKnown RBP12.81□□□□□ -0.36
VPS13D-204ENST00000469054 CLEC1BQ9P126 229 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 DPP7Q9UHL4 492 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 BARX2Q9UMQ3 279 aaPredicted RBP12.81□□□□□ -0.36
VPS13D-204ENST00000469054 POLIQ9UNA4 740 aa12.81□□□□□ -0.36
VPS13D-204ENST00000469054 WDR27A2RRH5 827 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 LRRN2O75325 713 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 ABLIM3O94929 683 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 OR4Q2P0C623 313 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 SPATA31D3P0C874 917 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 P4HA1P13674 534 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 CPB1P15086 417 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 HOXB8P17481 243 aaPredicted RBP12.8□□□□□ -0.36
VPS13D-204ENST00000469054 WARSP23381 471 aaKnown RBP12.8□□□□□ -0.36
VPS13D-204ENST00000469054 MTIF2P46199 727 aaKnown RBP12.8□□□□□ -0.36
VPS13D-204ENST00000469054 NOP14P78316 857 aaKnown RBP12.8□□□□□ -0.36
VPS13D-204ENST00000469054 MYL7Q01449 175 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 MYL5Q02045 173 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 CETN1Q12798 172 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 HSP90AA4PQ58FG1 418 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 WDR44Q5JSH3 913 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 TPGS2Q68CL5 300 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 SPATA31D4Q6ZUB0 917 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 KREMEN2Q8NCW0 462 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 OR10T2Q8NGX3 314 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 HDAC7Q8WUI4 952 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 KBTBD7Q8WVZ9 684 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 MSLNLQ96KJ4 702 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 TMEM209Q96SK2 561 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 BPIFA3Q9BQP9 254 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 ACBD6Q9BR61 282 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 MRPL45Q9BRJ2 306 aaKnown RBP12.8□□□□□ -0.36
VPS13D-204ENST00000469054 ZCWPW1Q9H0M4 648 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 PLEKHA4Q9H4M7 779 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.8□□□□□ -0.36
VPS13D-204ENST00000469054 MAN1C1Q9NR34 630 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 DZANK1Q9NVP4 752 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 FBXW11Q9UKB1 542 aa12.8□□□□□ -0.36
VPS13D-204ENST00000469054 KCNJ18B7U540 433 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 H3BQ06 376 aaPredicted RBP12.79□□□□□ -0.36
VPS13D-204ENST00000469054 ATF2P15336 505 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 PCSK1P29120 753 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 GNL1P36915 607 aaPredicted RBP12.79□□□□□ -0.36
VPS13D-204ENST00000469054 ZNF165P49910 485 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 CDH8P55286 799 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 GPR17Q13304 367 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 KCNJ12Q14500 433 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 NCAPHQ15003 741 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 MAN2A1Q16706 1144 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 UVSSAQ2YD98 709 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 TCP11X2Q5H9J9 407 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 SYCE2Q6PIF2 218 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 ELMSAN1Q6PJG2 1045 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 OR6B3Q8NGW1 331 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 FAXDC2Q96IV6 333 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 SDCBP2Q9H190 292 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 SMYD3Q9H7B4 428 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 CYP3A43Q9HB55 503 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 FANCLQ9NW38 375 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 THEGQ9P2T0 379 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 AFF4Q9UHB7 1163 aaKnown RBP12.79□□□□□ -0.36
VPS13D-204ENST00000469054 MAFFQ9ULX9 164 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 SCN1AP35498 2009 aa12.79□□□□□ -0.36
VPS13D-204ENST00000469054 SMTNL1A8MU46 457 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 HCRTO43612 131 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 WEE2P0C1S8 567 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 PRKCSHP14314 528 aaPredicted RBP12.78□□□□□ -0.36
VPS13D-204ENST00000469054 ACAT1P24752 427 aaKnown RBP12.78□□□□□ -0.36
VPS13D-204ENST00000469054 LMO2P25791 158 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 EEF1GP26641 437 aaKnown RBP12.78□□□□□ -0.36
VPS13D-204ENST00000469054 ELF1P32519 619 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 ASPAP45381 313 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 TSPY1Q01534 308 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 TFF2Q03403 129 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 ADCY1Q08828 1119 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 SMARCB1Q12824 385 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms