RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ADGRF2Q8IZF7 708 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 THEM5Q8N1Q8 247 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 ZNF461Q8TAF7 563 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 TAS1R2Q8TE23 839 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 ADAMTS19Q8TE59 1207 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 KBTBD7Q8WVZ9 684 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 LPIN3Q9BQK8 851 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 MKNK1Q9BUB5 465 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 CRISPLD1Q9H336 500 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 SFXN1Q9H9B4 322 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 CYP4F11Q9HBI6 524 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 TMLHEQ9NVH6 421 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 DZANK1Q9NVP4 752 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 DDX43Q9NXZ2 648 aaKnown RBP12.52□□□□□ -0.41
CUX1-207ENST00000465461 RWDD2AQ9UIY3 292 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 DSEQ9UL01 958 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 SLC27A5Q9Y2P5 690 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 NME7Q9Y5B8 376 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 MTCL1Q9Y4B5 1905 aaKnown RBP12.52□□□□□ -0.41
CUX1-207ENST00000465461 OR6C75A6NL08 312 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 IKBKBO14920 756 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 ATP2C2O75185 946 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 ZMYND10O75800 440 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SOAT2O75908 522 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 MBD3O95983 291 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 PDGFRBP09619 1106 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 PAX3P23760 479 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 AP3M2P53677 418 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 CDH8P55286 799 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 TNNC1P63316 161 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SMAD2Q15796 467 aaKnown RBP12.51□□□□□ -0.41
CUX1-207ENST00000465461 ZNF699Q32M78 642 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 CBWD6Q4V339 395 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SLC39A12Q504Y0 691 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 CBWD3Q5JTY5 395 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 CBWD5Q5RIA9 395 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 PPM1LQ5SGD2 360 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 CCDC183Q5T5S1 534 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 LIN9Q5TKA1 542 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 CES5AQ6NT32 575 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 GPR149Q86SP6 731 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 TTC9BQ8N6N2 239 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 TOP6BLQ8N6T0 577 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 MLKLQ8NB16 471 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 ATAD1Q8NBU5 361 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SUSD6Q92537 303 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SEMA4DQ92854 862 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SYAP1Q96A49 352 aaPredicted RBP12.51□□□□□ -0.41
CUX1-207ENST00000465461 ZNF707Q96C28 371 aaPredicted RBP12.51□□□□□ -0.41
CUX1-207ENST00000465461 CEP63Q96MT8 703 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 ZCWPW1Q9H0M4 648 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SDCBP2Q9H190 292 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 PLEKHA4Q9H4M7 779 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 POMKQ9H5K3 350 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 SMYD3Q9H7B4 428 aa12.51□□□□□ -0.41
CUX1-207ENST00000465461 APOBEC3GQ9HC16 384 aaKnown RBP12.51□□□□□ -0.41
CUX1-207ENST00000465461 ARMCX3Q9UH62 379 aaPredicted RBP12.51□□□□□ -0.41
CUX1-207ENST00000465461 XIRP2A4UGR9 3374 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 ARHGEF37A1IGU5 675 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 MTMR11A4FU01 709 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 PRRG1O14668 218 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 ATF2P15336 505 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 ATICP31939 592 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 ELF1P32519 619 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 PSMC1P62191 440 aaKnown RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 NTHL1P78549 312 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 ITIH3Q06033 890 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 DUSP4Q13115 394 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 GPR17Q13304 367 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 CBX2Q14781 532 aaPredicted RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 PUS10Q3MIT2 529 aaKnown RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 HSP90AA4PQ58FG1 418 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 ATAT1Q5SQI0 421 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 KRT39Q6A163 491 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 CAVIN1Q6NZI2 390 aaKnown RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 RBM43Q6ZSC3 357 aaKnown RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 LIMS2Q7Z4I7 341 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 FRMD5Q7Z6J6 570 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 OR6B3Q8NGW1 331 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 HDAC7Q8WUI4 952 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 SMG7Q92540 1137 aaKnown RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 RPGRIP1Q96KN7 1286 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 COL25A1Q9BXS0 654 aaPredicted RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 PRKD2Q9BZL6 878 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 PIDD1Q9HB75 910 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 TMEM8AQ9HCN3 771 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 CD320Q9NPF0 282 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 HCFC1R1Q9NWW0 138 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 AFF4Q9UHB7 1163 aaKnown RBP12.5□□□□□ -0.41
CUX1-207ENST00000465461 C2orf16Q68DN1 1984 aa12.5□□□□□ -0.41
CUX1-207ENST00000465461 MYBPHLA2RUH7 354 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 GABRDO14764 452 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 WARSP23381 471 aaKnown RBP12.49□□□□□ -0.41
CUX1-207ENST00000465461 MCCD1P59942 119 aaPredicted RBP12.49□□□□□ -0.41
CUX1-207ENST00000465461 MYL7Q01449 175 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 TWF1Q12792 350 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 ORC1Q13415 861 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 SGSM1Q2NKQ1 1148 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 ZNF667Q5HYK9 610 aa12.49□□□□□ -0.41
CUX1-207ENST00000465461 C11orf57Q6ZUT1 292 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms