RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 NBNO60934 754 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 EFCAB14O75071 495 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 POU3F3P20264 500 aaPredicted RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 PLA2G5P39877 138 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 SEPHS1P49903 392 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 WDR5P61964 334 aaKnown RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 AMPD2Q01433 879 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 TFF2Q03403 129 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 NECTIN1Q15223 517 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 TRIM71Q2Q1W2 868 aaKnown RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 METTL7BQ6UX53 244 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 CPNE8Q86YQ8 564 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 ZNF513Q8N8E2 541 aaPredicted RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 FAM122AQ96E09 287 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 RCC1LQ96I51 464 aaKnown RBP8.31□□□□□ -1.08
USP54-208ENST00000461520 PWWP2AQ96N64 755 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 KCNC2Q96PR1 638 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 SENP7Q9BQF6 1050 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 MYL10Q9BUA6 226 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 RXFP1Q9HBX9 757 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 APEX2Q9UBZ4 518 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 XIRP2A4UGR9 3374 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 REV3LO60673 3130 aa8.31□□□□□ -1.08
USP54-208ENST00000461520 EMSYQ7Z589 1322 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 C17orf102A2RUQ5 167 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 NOP56O00567 594 aaKnown RBP8.3□□□□□ -1.08
USP54-208ENST00000461520 MEIS2O14770 477 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 PLEKHA8P1O95397 391 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 LGALS2P05162 132 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 HOXC8P31273 242 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 KCNQ1P51787 676 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 CORO7P57737 925 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 PRR5P85299 388 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 TAP1Q03518 808 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 ZNF618Q5T7W0 954 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 CREB3L3Q68CJ9 461 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 USP17L6PQ6QN14 398 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 SERINC5Q86VE9 423 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 SGMS1Q86VZ5 419 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 SRBD1Q8N5C6 995 aaKnown RBP8.3□□□□□ -1.08
USP54-208ENST00000461520 GIMAP8Q8ND71 665 aaPredicted RBP8.3□□□□□ -1.08
USP54-208ENST00000461520 PIBF1Q8WXW3 757 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 GPR20Q99678 358 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 RTEL1Q9NZ71 1219 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 FBLN5Q9UBX5 448 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 ZNF215Q9UL58 517 aaPredicted RBP8.3□□□□□ -1.08
USP54-208ENST00000461520 AKT3Q9Y243 479 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 RWDD3Q9Y3V2 267 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 BACE2Q9Y5Z0 518 aa8.3□□□□□ -1.08
USP54-208ENST00000461520 ADAMTS20P59510 1910 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 ANKRD34BA5PLL1 514 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 RSPH10B2B2RC85 870 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 MAFGO15525 162 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 CAND2O75155 1236 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 GJB5O95377 273 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 RSPH10BP0C881 870 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 SMIM10L2AP0DMW4 78 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 SMIM10L2BP0DMW5 78 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 GNAT1P11488 350 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 THPOP40225 353 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 LIMS1P48059 325 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 DEFB103AP81534 67 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 BMP2KLQ5H9B9 411 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 SYNE3Q6ZMZ3 975 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 FANCBQ8NB91 859 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 ATP6V0A1Q93050 837 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 CDHR1Q96JP9 859 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 RAD9AQ99638 391 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 KRTAP4-9Q9BYQ8 210 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 RNPEPQ9H4A4 650 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 BCAS3Q9H6U6 928 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 PSTPIP2Q9H939 334 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 CERS4Q9HA82 394 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 MTCH2Q9Y6C9 303 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 TRANK1O15050 2925 aa8.29□□□□□ -1.08
USP54-208ENST00000461520 COL4A4P53420 1690 aaPredicted RBP8.28□□□□□ -1.08
USP54-208ENST00000461520 ATF4P18848 351 aaPredicted RBP8.28□□□□□ -1.08
USP54-208ENST00000461520 RXRAP19793 462 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 IGFBP6P24592 240 aaPredicted RBP8.28□□□□□ -1.08
USP54-208ENST00000461520 GRB10Q13322 594 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 AAK1Q2M2I8 961 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 TCTN1Q2MV58 587 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 PLEKHG4Q58EX7 1191 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 TMTC3Q6ZXV5 915 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 CENPQQ7L2Z9 268 aaPredicted RBP8.28□□□□□ -1.08
USP54-208ENST00000461520 TEX2Q8IWB9 1127 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 DBF4BQ8NFT6 615 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 ARNTL2Q8WYA1 636 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 NEK1Q96PY6 1258 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 C1QTNF1Q9BXJ1 281 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 RBM28Q9NW13 759 aaKnown RBP8.28□□□□□ -1.08
USP54-208ENST00000461520 GULP1Q9UBP9 304 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 DBR1Q9UK59 544 aaKnown RBP8.28□□□□□ -1.08
USP54-208ENST00000461520 STRIP2Q9ULQ0 834 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 PTPRSQ13332 1948 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 NRCAMQ92823 1304 aa8.28□□□□□ -1.08
USP54-208ENST00000461520 EPOPA6NHQ4 379 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 KCNH1O95259 989 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 AMHP03971 560 aa8.27□□□□□ -1.09
USP54-208ENST00000461520 GLI4P10075 376 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms