RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LRRC57Q8N9N7 239 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 TRAPPC12Q8WVT3 735 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 ZNF606Q8WXB4 792 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 SHC3Q92529 594 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 ATP2A3Q93084 1043 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 TRABDQ9H4I3 376 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 PCDHA3Q9Y5H8 950 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 CHD4Q14839 1912 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 TOGARAM1Q9Y4F4 1720 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 A0A1B0GUA9 196 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 PTPRAP18433 802 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 RCN2Q14257 317 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 TEX2Q8IWB9 1127 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 DAW1Q8N136 415 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 EMC1Q8N766 993 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 KLC4Q9NSK0 619 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 SNX9Q9Y5X1 595 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 OGTO15294 1046 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 TOM1L1O75674 476 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 ARL4AP40617 200 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 HSD17B4P51659 736 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 SYDE1Q6ZW31 735 aaPredicted RBP12.26□□□□□ -0.45
NPHP4-204ENST00000460696 PPP1R13LQ8WUF5 828 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 TTC25Q96NG3 672 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 PPP1R12CQ9BZL4 782 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 NEUROG2Q9H2A3 272 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 CISHQ9NSE2 258 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 DDX56Q9NY93 547 aaKnown RBP12.26□□□□□ -0.45
NPHP4-204ENST00000460696 COG5Q9UP83 839 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 NUB1Q9Y5A7 615 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 M0QZ92 97 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 OPLAHO14841 1288 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 RBP3P10745 1247 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 GCNT1Q02742 428 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 ABRAQ8N0Z2 381 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 PPFIBP2Q8ND30 876 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 RAB3IPQ96QF0 476 aaPredicted RBP12.26□□□□□ -0.45
NPHP4-204ENST00000460696 LRRC4Q9HBW1 653 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 FAM49BQ9NUQ9 324 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 FAM53CQ9NYF3 392 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 UBR2Q8IWV8 1755 aa12.26□□□□□ -0.45
NPHP4-204ENST00000460696 TBC1D12O60347 775 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ZC3H11AO75152 810 aaKnown RBP eCLIP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ITGB3P05106 788 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 TNFRSF8P28908 595 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 JAM2P57087 298 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 SKOR1P84550 965 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 PIGHQ14442 188 aaPredicted RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 SPOUT1Q5T280 376 aaKnown RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 SMARCAD1Q9H4L7 1026 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 IRS2Q9Y4H2 1338 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 CHUKO15111 745 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ADORA2BP29275 332 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 TNFAIP2Q03169 654 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 FBXO16Q8IX29 292 aaPredicted RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 GPRC5AQ8NFJ5 357 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 DPF3Q92784 378 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 TMEM121Q9BTD3 319 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 DHX35Q9H5Z1 703 aaKnown RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 TPX2Q9ULW0 747 aaKnown RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 CCDC88AQ3V6T2 1871 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 MYL3P08590 195 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 RAP1GAPP47736 663 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 SPATA21Q7Z572 469 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ATP11CQ8NB49 1132 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 CGRRF1Q99675 332 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ROPN1BQ9BZX4 212 aaPredicted RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ROPN1Q9HAT0 212 aaPredicted RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 ETNK1Q9HBU6 452 aa12.25□□□□□ -0.45
NPHP4-204ENST00000460696 METTL5Q9NRN9 209 aaKnown RBP12.25□□□□□ -0.45
NPHP4-204ENST00000460696 A8MXQ7 604 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 MAPK13O15264 365 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 DYNC1LI2O43237 492 aaPredicted RBP12.24□□□□□ -0.45
NPHP4-204ENST00000460696 MMP14P50281 582 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 ATP13A4Q4VNC1 1196 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.24□□□□□ -0.45
NPHP4-204ENST00000460696 PRUNE1Q86TP1 453 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 MREGQ8N565 214 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 DNAAF3Q8N9W5 541 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 SPATA18Q8TC71 538 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 BSNDQ8WZ55 320 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 MAML1Q92585 1016 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 RNF208Q9H0X6 261 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 CYP39A1Q9NYL5 469 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 CHMP2BQ9UQN3 213 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 COMMD10Q9Y6G5 202 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 EP400Q96L91 3159 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 NCANO14594 1321 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 IQANK1A0A1B0GTG1 560 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 TCRBV7S2A1N4TA0A589 114 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 RIPK2O43353 540 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 CIB2O75838 187 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 CDH8P55286 799 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 ROR1Q01973 937 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 TMEM132BQ14DG7 1078 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 PCGF5Q86SE9 256 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 ASAP3Q8TDY4 903 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 MICAL1Q8TDZ2 1067 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 PWWP2AQ96N64 755 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms