RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 CETN1Q12798 172 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 TTC27Q6P3X3 843 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 CCDC121Q6ZUS5 278 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 INTS8Q75QN2 995 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 YTHDF3Q7Z739 585 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 SLC9A9Q8IVB4 645 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 C7orf61Q8IZ16 206 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 UBL4BQ8N7F7 174 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 FBF1Q8TES7 1133 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 USP33Q8TEY7 942 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 CHURC1Q8WUH1 139 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 ZNF75CPQ92670 426 aaPredicted RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 GLIS2Q9BZE0 524 aaPredicted RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 SEMA4AQ9H3S1 761 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 RRAGCQ9HB90 399 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 LARSQ9P2J5 1176 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 GGT7Q9UJ14 662 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 ANKRD31Q8N7Z5 1873 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 ATXN2Q99700 1313 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 CYP26A1O43174 497 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 PYGMP11217 842 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 PTGIRP43119 386 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 RPL21P46778 160 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 KCNJ1P48048 391 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 CACNB2Q08289 660 aaPredicted RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 MRPL28Q13084 256 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 SPRED3Q2MJR0 410 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 TUSC1Q2TAM9 212 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 C1orf220Q5T0J3 134 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 PPM1KQ8N3J5 372 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 NKAPQ8N5F7 415 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 SNX27Q96L92 541 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 SELENOSQ9BQE4 189 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 MXRA8Q9BRK3 442 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 PABPC3Q9H361 631 aaKnown RBP12.49□□□□□ -0.41
SYNE2-207ENST00000458046 GPRC5CQ9NQ84 441 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 KCNH7Q9NS40 1196 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 KCND2Q9NZV8 630 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 AFG3L2Q9Y4W6 797 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 ZHX2Q9Y6X8 837 aa12.49□□□□□ -0.41
SYNE2-207ENST00000458046 GOLGA6L7A0A1B0GV03 622 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 FAM187AA6NFU0 413 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 MSL3P1P0C860 447 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 SLCO1A2P46721 670 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 FKBP1AP62942 108 aaKnown RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 IFI35P80217 286 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 ACTN3Q08043 901 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 TRAF1Q13077 416 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 DHX34Q14147 1143 aaKnown RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 DENND2CQ68D51 928 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 CCDC137Q6PK04 289 aaKnown RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 B3GNT9Q6UX72 402 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 SAPCD2Q86UD0 394 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 SLC47A2Q86VL8 602 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 CCDC13Q8IYE1 715 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 IL31RAQ8NI17 732 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 CCDC127Q96BQ5 260 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 ZSWIM1Q9BR11 485 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 EHMT1Q9H9B1 1298 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 HSPBP1Q9NZL4 362 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 NOD1Q9Y239 953 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 BRCA1P38398 1863 aaKnown RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 ATRNL1Q5VV63 1379 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 SRRM3A6NNA2 597 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 H0YIN7 160 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 SLC16A4O15374 487 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 PHF2O75151 1096 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 CD4P01730 458 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 CHRNB2P17787 502 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 VEGFBP49765 207 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 EIF3BP55884 814 aaKnown RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 PPP2R5EQ16537 467 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 C11orf91Q3C1V1 193 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 NSMFQ6X4W1 530 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 LSMEM1Q8N8F7 131 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 XXYLT1Q8NBI6 393 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 TLCD1Q96CP7 247 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 CRELD1Q96HD1 420 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 ALPK1Q96QP1 1244 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 ACCSQ96QU6 501 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 POP1Q99575 1024 aaKnown RBP12.48□□□□□ -0.41
SYNE2-207ENST00000458046 OSBPL7Q9BZF2 842 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 PRKD2Q9BZL6 878 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 AZI2Q9H6S1 392 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 GRHL1Q9NZI5 618 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 COL20A1Q9P218 1284 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 RASAL2Q9UJF2 1139 aa12.48□□□□□ -0.41
SYNE2-207ENST00000458046 SCN9AQ15858 1988 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 FAM155AB1AL88 458 aaPredicted RBP12.47□□□□□ -0.41
SYNE2-207ENST00000458046 DNM1LO00429 736 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 CTNND1O60716 968 aaKnown RBP12.47□□□□□ -0.41
SYNE2-207ENST00000458046 RTN2O75298 545 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 SETSIPP0DME0 302 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 FGFR4P22455 802 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 MAGEA8P43361 318 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 PEX5P50542 639 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 PEX3P56589 373 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 EPC2Q52LR7 807 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 HAUS6Q7Z4H7 955 aa12.47□□□□□ -0.41
SYNE2-207ENST00000458046 CCDC105Q8IYK2 499 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms