RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 TRIOBPQ9H2D6 2365 aa12.4□□□□□ -0.42
SCN9A-204ENST00000452182 ITIH6Q6UXX5 1313 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 GOLGA6L3A6NEY3 463 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 SOX1O00570 391 aaPredicted RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 GRM6O15303 877 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 NOL4O94818 638 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 WARSP23381 471 aaKnown RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 LHX1P48742 406 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 YWHAHQ04917 246 aaPredicted RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 INCA1Q0VD86 236 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 LRMPQ12912 555 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 CAMK1Q14012 370 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 BMS1Q14692 1282 aaKnown RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 FIGNQ5HY92 759 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 RTP2Q5QGT7 225 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 VARS2Q5ST30 1063 aaKnown RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 WSCD1Q658N2 575 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 OVOS1Q6IE37 1185 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 KIAA1841Q6NSI8 718 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 METTL23Q86XA0 190 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 ARHGEF19Q8IW93 802 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 ADGRF2Q8IZF7 708 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 LNX1Q8TBB1 728 aaPredicted RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 KBTBD7Q8WVZ9 684 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 ELMO3Q96BJ8 720 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 TRIM5Q9C035 493 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 CERS4Q9HA82 394 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 NGRNQ9NPE2 291 aaKnown RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 TLR9Q9NR96 1032 aa12.39□□□□□ -0.43
SCN9A-204ENST00000452182 COL4A4P53420 1690 aaPredicted RBP12.39□□□□□ -0.43
SCN9A-204ENST00000452182 CDH23Q9H251 3354 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 H7C4K7 107 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 FSCN2O14926 492 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 TBC1D4O60343 1298 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 LILRB3O75022 631 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 CLSTN1O94985 981 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 URODP06132 367 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 UCHL3P15374 230 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 DNAJB1P25685 340 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 MFAP3P55082 362 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 YWHAEP62258 255 aaKnown RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 CREMQ03060 361 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 UNC93AQ86WB7 457 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 CEP57Q86XR8 500 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 UBR7Q8N806 425 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 NEK11Q8NG66 645 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 IQCDQ96DY2 449 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 MRFAP1L1Q96HT8 127 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 ARID3AQ99856 593 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 LSM14BQ9BX40 385 aaKnown RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 NAA15Q9BXJ9 866 aaKnown RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 SDCBP2Q9H190 292 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 GANQ9H2C0 597 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 TTYH1Q9H313 450 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 SMYD3Q9H7B4 428 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 RXFP1Q9HBX9 757 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 UBE2TQ9NPD8 197 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 MRPL17Q9NRX2 175 aaKnown RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 FAM207AQ9NSI2 230 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 STXBP5LQ9Y2K9 1186 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 TIMM13Q9Y5L4 95 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-204ENST00000452182 BACE2Q9Y5Z0 518 aa12.38□□□□□ -0.43
SCN9A-204ENST00000452182 EPOPA6NHQ4 379 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 LPXNO60711 386 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 WEE2P0C1S8 567 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 GNL1P36915 607 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 KLK7P49862 253 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 CDH8P55286 799 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ERVFC1P60507 584 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 APBA1Q02410 837 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 SMC1AQ14683 1233 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 PTPN14Q15678 1187 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 HABP4Q5JVS0 413 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ZNF280DQ6N043 979 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 SCARA5Q6ZMJ2 495 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 RRAGAQ7L523 313 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 TMC7Q7Z402 723 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 THEM5Q8N1Q8 247 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 MRPL43Q8N983 215 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 RIN2Q8WYP3 895 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 B3GALT6Q96L58 329 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 PCMTD1Q96MG8 357 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 KREMEN1Q96MU8 473 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 TCF25Q9BQ70 676 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ACBD6Q9BR61 282 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 MRPL45Q9BRJ2 306 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 NUP58Q9BVL2 599 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 EDEM3Q9BZQ6 932 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 GRPEL1Q9HAV7 217 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 CISHQ9NSE2 258 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 FNIP2Q9P278 1114 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 MTRRQ9UBK8 725 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 DNAJC12Q9UKB3 198 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 BARX2Q9UMQ3 279 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 CNTN6Q9UQ52 1028 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ATG2AQ2TAZ0 1938 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 OR6C75A6NL08 312 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 EPHB6O15197 1021 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms