RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ENGASEQ8NFI3 743 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 TMEM174Q8WUU8 243 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 NXPE3Q969Y0 559 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 HPDLQ96IR7 371 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 ZNF512Q96ME7 567 aaPredicted RBP16.34■□□□□ 0.21
LIMS3-201ENST00000437679 TMEM209Q96SK2 561 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 CORO1BQ9BR76 489 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 AVENQ9NQS1 362 aaPredicted RBP16.34■□□□□ 0.21
LIMS3-201ENST00000437679 DMAC2Q9NW81 257 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 RMND1Q9NWS8 449 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 GDAP2Q9NXN4 497 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 MRPS23Q9Y3D9 190 aaKnown RBP16.34■□□□□ 0.21
LIMS3-201ENST00000437679 YIPF1Q9Y548 306 aa16.34■□□□□ 0.21
LIMS3-201ENST00000437679 NOTCH4Q99466 2003 aa16.33■□□□□ 0.21
LIMS3-201ENST00000437679 TRIOO75962 3097 aa16.33■□□□□ 0.21
LIMS3-201ENST00000437679 MTMR11A4FU01 709 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 SMC2O95347 1197 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 ALDH1A3P47895 512 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 EPHB3P54753 998 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 MYL7Q01449 175 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 TSPY1Q01534 308 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 SMARCB1Q12824 385 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 SLC39A12Q504Y0 691 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 SCARA3Q6AZY7 606 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 CENPPQ6IPU0 288 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 DCP1BQ8IZD4 617 aaKnown RBP16.33■□□□□ 0.2
LIMS3-201ENST00000437679 GUF1Q8N442 669 aaKnown RBP16.33■□□□□ 0.2
LIMS3-201ENST00000437679 TOP6BLQ8N6T0 577 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 ATAD1Q8NBU5 361 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 ITFG1Q8TB96 612 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 SPATA18Q8TC71 538 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 FGF13Q92913 245 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 TIGD1Q96MW7 591 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 RTP3Q9BQQ7 232 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 CHMP5Q9NZZ3 219 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 HSFX1Q9UBD0 423 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 L1RE1Q9UN81 338 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 MAPK8IP1Q9UQF2 711 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 TRAF3IP3Q9Y228 551 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 FRMD4BQ9Y2L6 1034 aa16.33■□□□□ 0.2
LIMS3-201ENST00000437679 ZNF197O14709 1029 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 VNN2O95498 520 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 COL9A1P20849 921 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 AP3M2P53677 418 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 TRPC3Q13507 836 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 CYP4A22Q5TCH4 519 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 CEP135Q66GS9 1140 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 PDZD4Q76G19 769 aaPredicted RBP16.32■□□□□ 0.2
LIMS3-201ENST00000437679 DPH6Q7L8W6 267 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 LEMD2Q8NC56 503 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 C2orf15Q8WU43 125 aaKnown RBP16.32■□□□□ 0.2
LIMS3-201ENST00000437679 CRISPLD1Q9H336 500 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 DDX43Q9NXZ2 648 aaKnown RBP16.32■□□□□ 0.2
LIMS3-201ENST00000437679 CEP72Q9P209 647 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 SLC27A5Q9Y2P5 690 aa16.32■□□□□ 0.2
LIMS3-201ENST00000437679 PHACTR2O75167 634 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 RPL13P26373 211 aaKnown RBP16.31■□□□□ 0.2
LIMS3-201ENST00000437679 LHX1P48742 406 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 TUFMP49411 452 aaKnown RBP16.31■□□□□ 0.2
LIMS3-201ENST00000437679 CASP4P49662 377 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 BIRC3Q13489 604 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 NFIL3Q16649 462 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 HFE2Q6ZVN8 426 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 MTSS1LQ765P7 747 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 BMP8AQ7Z5Y6 402 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 ADGRF2Q8IZF7 708 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 SPPL2BQ8TCT7 592 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 PARD3BQ8TEW8 1205 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 RSAD2Q8WXG1 361 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 ING5Q8WYH8 240 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 ZNF516Q92618 1163 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 SMARCE1Q969G3 411 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 PBXIP1Q96AQ6 731 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 GSDMAQ96QA5 445 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 SEPT5Q99719 369 aaPredicted RBP16.31■□□□□ 0.2
LIMS3-201ENST00000437679 ACBD6Q9BR61 282 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 SMOC2Q9H3U7 446 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 ASAH2Q9NR71 780 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 DUSP12Q9UNI6 340 aa16.31■□□□□ 0.2
LIMS3-201ENST00000437679 ANHXE9PGG2 379 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 KINO60870 393 aaKnown RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 CST3P01034 146 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 NR2F2P24468 414 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 PCSK1P29120 753 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 HTR4Q13639 388 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 NFE2Q16621 373 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 SLC5A9Q2M3M2 681 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 SOWAHAQ2M3V2 549 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 MGAT5BQ3V5L5 792 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 LRRTM3Q86VH5 581 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 NPAS3Q8IXF0 933 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 SYAP1Q96A49 352 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 ASIC4Q96FT7 647 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 MMS19Q96T76 1030 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 GTPBP4Q9BZE4 634 aaKnown RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 GZF1Q9H116 711 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 ABI2Q9NYB9 513 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-201ENST00000437679 GDE1Q9NZC3 331 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 HCN4Q9Y3Q4 1203 aa16.3■□□□□ 0.2
LIMS3-201ENST00000437679 ASB3Q9Y575 518 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms