RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 MATR3P43243 847 aaKnown RBP eCLIP13.13□□□□□ -0.313e-6■■□□□ 12.9
PTPRF-208ENST00000437607 CYP2J2P51589 502 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 PRPF4BQ13523 1007 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 NFIL3Q16649 462 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 CCDC40Q4G0X9 1142 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 HSP90AA4PQ58FG1 418 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 SLC7A14Q8TBB6 771 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 RMDN1Q96DB5 314 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 CNOT6LQ96LI5 555 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 PPP1R10Q96QC0 940 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 DUSP9Q99956 384 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 SRRTQ9BXP5 876 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 FANCLQ9NW38 375 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 ANKFY1Q9P2R3 1169 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 MTF2Q9Y483 593 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 NUP210Q8TEM1 1887 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-208ENST00000437607 KCNJ18B7U540 433 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 TMEM189-UBE2V1I3L0A0 370 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 CLIC2O15247 247 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 SLC16A3O15427 465 aaKnown RBP13.12□□□□□ -0.31
PTPRF-208ENST00000437607 TGFB1I1O43294 461 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 GNA14O95837 355 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 POU2F2P09086 479 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 OR1D2P34982 312 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 RAB33AQ14088 237 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 KCNJ12Q14500 433 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 GLRA4Q5JXX5 417 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 LIN9Q5TKA1 542 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 CDKAL1Q5VV42 579 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 CEP135Q66GS9 1140 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 ZPBP2Q6X784 338 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-208ENST00000437607 C12orf56Q8IXR9 622 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 ZC3H3Q8IXZ2 948 aaKnown RBP13.12□□□□□ -0.31
PTPRF-208ENST00000437607 C3orf58Q8NDZ4 430 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 POMGNT1Q8WZA1 660 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 MED15Q96RN5 788 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 KXD1Q9BQD3 176 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 GOLGA2P5Q9HBQ8 144 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 SAMSN1Q9NSI8 373 aaKnown RBP13.12□□□□□ -0.31
PTPRF-208ENST00000437607 DNMT3BQ9UBC3 853 aaKnown RBP13.12□□□□□ -0.31
PTPRF-208ENST00000437607 MTRRQ9UBK8 725 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 FRMD4BQ9Y2L6 1034 aa13.12□□□□□ -0.31
PTPRF-208ENST00000437607 NCOR2Q9Y618 2525 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 ZNF638Q14966 1978 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 KANSL1LA0AUZ9 987 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 KIAA0391O15091 583 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 EXOC3O60645 756 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 SERPINC1P01008 464 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 TPM3P06753 285 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 HARSP12081 509 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 ZNF18P17022 549 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 GARTP22102 1010 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 EEF1GP26641 437 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 MTIF2P46199 727 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 CLCNKBP51801 687 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 ELAVL2Q12926 359 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 ADAM9Q13443 819 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 MYBPC2Q14324 1141 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 NOLC1Q14978 699 aaKnown RBP eCLIP13.11□□□□□ -0.317e-9■■■□□ 15.3
PTPRF-208ENST00000437607 MLF2Q15773 248 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 SLC5A9Q2M3M2 681 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 ZNF568Q3ZCX4 644 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 SLC44A4Q53GD3 710 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 ATF7IP2Q5U623 682 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 SLFN12LQ6IEE8 588 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 MTSS1LQ765P7 747 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 APBB1IPQ7Z5R6 666 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 CREBRFQ8IUR6 639 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 NPAS3Q8IXF0 933 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 KIAA2013Q8IYS2 634 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 DCLK2Q8N568 766 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 SUMF1Q8NBK3 374 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 DDX27Q96GQ7 796 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 CBWD1Q9BRT8 395 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 TARS2Q9BW92 718 aaKnown RBP13.11□□□□□ -0.31
PTPRF-208ENST00000437607 PLA2G2FQ9BZM2 168 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 IKZF4Q9H2S9 585 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 HSPBP1Q9NZL4 362 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 POLIQ9UNA4 740 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 CDY1Q9Y6F8 540 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 TSC2P49815 1807 aa13.11□□□□□ -0.31
PTPRF-208ENST00000437607 OBSL1O75147 1896 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SHISA7A6NL88 538 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 TISP43B9A030 160 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 I3L4J1 428 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 CBFA2T2O43439 604 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 XYLBO75191 536 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 TOM1L1O75674 476 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 ATP1A3P13637 1013 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 CD72P21854 359 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 TKTP29401 623 aaKnown RBP13.1□□□□□ -0.31
PTPRF-208ENST00000437607 BRCC3P46736 316 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SOX4Q06945 474 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-208ENST00000437607 UPP1Q16831 310 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 PABPC1LQ4VXU2 614 aaKnown RBP13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SLC39A4Q6P5W5 647 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 PDXDC1Q6P996 788 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SARM1Q6SZW1 724 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SLC9A9Q8IVB4 645 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms