RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 SMC1AQ14683 1233 aaKnown RBP22.46■■□□□ 1.19
PTPRF-207ENST00000436724 WDTC1Q8N5D0 677 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 BEST2Q8NFU1 509 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 HINFPQ9BQA5 517 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 P4HA1P13674 534 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 PHF13Q86YI8 300 aaPredicted RBP22.45■■□□□ 1.18
PTPRF-207ENST00000436724 ALG3Q92685 438 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 KRT35Q92764 455 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 ZFP42Q96MM3 310 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 RNF14Q9UBS8 474 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 ANAPC7Q9UJX3 599 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 SNX9Q9Y5X1 595 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 PDCD11Q14690 1871 aaKnown RBP22.45■■□□□ 1.18
PTPRF-207ENST00000436724 FKTNO75072 461 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 GJB6O95452 261 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 SOX4Q06945 474 aaPredicted RBP22.45■■□□□ 1.18
PTPRF-207ENST00000436724 MYO1EQ12965 1108 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 FAXDC2Q96IV6 333 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 PBKQ96KB5 322 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 CYP3A43Q9HB55 503 aa22.45■■□□□ 1.18
PTPRF-207ENST00000436724 AVENQ9NQS1 362 aaPredicted RBP22.45■■□□□ 1.18
PTPRF-207ENST00000436724 POLR3GO15318 223 aaPredicted RBP22.44■■□□□ 1.18
PTPRF-207ENST00000436724 STAU1O95793 577 aaKnown RBP22.44■■□□□ 1.18
PTPRF-207ENST00000436724 NDST1P52848 882 aa22.44■■□□□ 1.18
PTPRF-207ENST00000436724 C9orf57Q5W0N0 161 aa22.44■■□□□ 1.18
PTPRF-207ENST00000436724 LHX8Q68G74 356 aa22.44■■□□□ 1.18
PTPRF-207ENST00000436724 DENND1BQ6P3S1 775 aa22.44■■□□□ 1.18
PTPRF-207ENST00000436724 TMEM176AQ96HP8 235 aa22.44■■□□□ 1.18
PTPRF-207ENST00000436724 UBQLN1Q9UMX0 589 aaKnown RBP22.44■■□□□ 1.18
PTPRF-207ENST00000436724 CES2O00748 559 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 MYBL1P10243 752 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 MMP8P22894 467 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 ITIH3Q06033 890 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 PTPN11Q06124 597 aaPredicted RBP22.43■■□□□ 1.18
PTPRF-207ENST00000436724 XKR4Q5GH76 650 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 DPH6Q7L8W6 267 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 RPAINQ86UA6 219 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 USP38Q8NB14 1042 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 TRIM11Q96F44 468 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 PCDHGC3Q9UN70 934 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 NOD1Q9Y239 953 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 TLR3O15455 904 aaKnown RBP22.43■■□□□ 1.18
PTPRF-207ENST00000436724 GNRH1P01148 92 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 GHRP10912 638 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 OAS2P29728 719 aaKnown RBP22.43■■□□□ 1.18
PTPRF-207ENST00000436724 CD52P31358 61 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 VSNL1P62760 191 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 ZNF211Q13398 564 aaPredicted RBP22.43■■□□□ 1.18
PTPRF-207ENST00000436724 HDAC7Q8WUI4 952 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 LRRC1Q9BTT6 524 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 FAM105AQ9NUU6 356 aa22.43■■□□□ 1.18
PTPRF-207ENST00000436724 BARX2Q9UMQ3 279 aaPredicted RBP22.43■■□□□ 1.18
PTPRF-207ENST00000436724 ZMYND10O75800 440 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 PAEPP09466 180 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 KCNE1P15382 129 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 AFF1P51825 1210 aaKnown RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 INCA1Q0VD86 236 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 MAMLD1Q13495 774 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 DAB2IPQ5VWQ8 1189 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 AADACL2Q6P093 401 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 MMGT1Q8N4V1 131 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 TMEM35BQ8NCS4 154 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 LPPQ93052 612 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 CALR3Q96L12 384 aaKnown RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 MRPL45Q9BRJ2 306 aaKnown RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 SELENOOQ9BVL4 669 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 CYTH4Q9UIA0 394 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 L1RE1Q9UN81 338 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 PTGESO14684 152 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 SPOPO43791 374 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 LSM8O95777 96 aaKnown RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 GRK4P32298 578 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 C1QBPQ07021 282 aaKnown RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 LIN9Q5TKA1 542 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 ACTRT1Q8TDG2 376 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 VCPIP1Q96JH7 1222 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 HEXIM2Q96MH2 286 aaKnown RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 AP1M1Q9BXS5 423 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 HMX1Q9NP08 348 aaPredicted RBP22.42■■□□□ 1.18
PTPRF-207ENST00000436724 TJP2Q9UDY2 1190 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 PADI3Q9ULW8 664 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 PTCH2Q9Y6C5 1203 aa22.42■■□□□ 1.18
PTPRF-207ENST00000436724 SPTLC1O15269 473 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 IBSPP21815 317 aaPredicted RBP22.41■■□□□ 1.18
PTPRF-207ENST00000436724 FBXO47Q5MNV8 452 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 LRRC52Q8N7C0 313 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 CD101Q93033 1021 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 GLT1D1Q96MS3 346 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 RPS6KC1Q96S38 1066 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 CACNG4Q9UBN1 327 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 NME7Q9Y5B8 376 aa22.41■■□□□ 1.18
PTPRF-207ENST00000436724 PIRO00625 290 aa22.4■■□□□ 1.18
PTPRF-207ENST00000436724 CDH5P33151 784 aaPredicted RBP22.4■■□□□ 1.18
PTPRF-207ENST00000436724 CYP4A22Q5TCH4 519 aa22.4■■□□□ 1.18
PTPRF-207ENST00000436724 PLEKHA7Q6IQ23 1121 aa22.4■■□□□ 1.18
PTPRF-207ENST00000436724 RASGEF1CQ8N431 466 aa22.4■■□□□ 1.18
PTPRF-207ENST00000436724 C12orf29Q8N999 325 aa22.4■■□□□ 1.18
PTPRF-207ENST00000436724 SH3TC2Q8TF17 1288 aa22.4■■□□□ 1.18
PTPRF-207ENST00000436724 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.4■■□□□ 1.188e-15■□□□□ 8.8
PTPRF-207ENST00000436724 TRPV6Q9H1D0 765 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 346.5 ms