RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 MRFAP1Q9Y605 127 aa16.08■□□□□ 0.16
PTPRF-206ENST00000429895 HPDLQ96IR7 371 aa16.08■□□□□ 0.16
PTPRF-206ENST00000429895 SLITRK1Q96PX8 696 aa16.08■□□□□ 0.16
PTPRF-206ENST00000429895 ZCCHC17Q9NP64 241 aaKnown RBP16.08■□□□□ 0.16
PTPRF-206ENST00000429895 MYMKA6NI61 221 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CLASP2O75122 1294 aaKnown RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 GSNP06396 782 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PTPN7P35236 360 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 NAA30Q147X3 362 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CCDC142Q17RM4 750 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 ERAP2Q6P179 960 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 STOX1Q6ZVD7 989 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 SYDE1Q6ZW31 735 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 VMP1Q96GC9 406 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CYTH3O43739 400 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 ALDH1A2O94788 518 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 UCHL3P15374 230 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 TCF7P36402 384 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 ACADSBP45954 432 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PCYT1AP49585 367 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PDK1Q15118 436 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 KHDRBS2Q5VWX1 349 aaKnown RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 NOTUMQ6P988 496 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 GALNT4Q8N4A0 578 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PHF20Q9BVI0 1012 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 SHCBP1LQ9BZQ2 653 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PSMC3IPQ9P2W1 217 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 UVRAGQ9P2Y5 699 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 TRIM10Q9UDY6 481 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 TTLL13PA6NNM8 815 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PGK2P07205 417 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 MAGEA9P43362 315 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 TRPC1P48995 793 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 BYSLQ13895 437 aaKnown RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 ANGPT1Q15389 498 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 SGMS1Q86VZ5 419 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CCDC33Q8N5R6 958 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 OSBPL10Q9BXB5 764 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 VCPKMTQ9H867 229 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 USE1Q9NZ43 259 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CPSF1Q10570 1443 aaKnown RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PRR23D1E9PI22 279 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 APOA1P02647 267 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PRR23D2P0DMB1 279 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-206ENST00000429895 PLIN5Q00G26 463 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 LAMB3Q13751 1172 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 GRAMD1AQ96CP6 724 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 CRAMP1Q96RY5 1269 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 ATP11BQ9Y2G3 1177 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 ENDOD1O94919 500 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 RNF180Q86T96 592 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 FAM71DQ8N9W8 422 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 MXRA8Q9BRK3 442 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 SLC39A10Q9ULF5 831 aa16.07■□□□□ 0.16
PTPRF-206ENST00000429895 NBPF26B4DH59 902 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 POLBP06746 335 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 FAM200BP0CF97 657 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 KLK7P49862 253 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 RPS6P62753 249 aaKnown RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 SLC18A3Q16572 532 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 NBPF15Q8N660 670 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 WNK4Q96J92 1243 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 ASCC2Q9H1I8 757 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 EXOSC4Q9NPD3 245 aaKnown RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 AGPAT5Q9NUQ2 364 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 GRIN3BO60391 1043 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 MLNP12872 115 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 TEX9Q8N6V9 391 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 SGF29Q96ES7 293 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 MAN1C1Q9NR34 630 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 PMPCBO75439 489 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 NBPF9Q3BBW0 867 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 CENPPQ6IPU0 288 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 GJB7Q6PEY0 223 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 C3orf62Q6ZUJ4 267 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 KCTD17Q8N5Z5 321 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 OR2W6PQ8NHA6 318 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 KRT35Q92764 455 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 ATG4CQ96DT6 458 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 TAAR1Q96RJ0 339 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 WDR24Q96S15 920 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 MTA3Q9BTC8 594 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 KDM6AO15550 1401 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 NCF1BA6NI72 391 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 NCF1CA8MVU1 366 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 EXTL3O43909 919 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 SLC25A27O95847 323 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 NCF1P14598 390 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 SLC9A1P19634 815 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 FCGRTP55899 365 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 ALDH6A1Q02252 535 aaKnown RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 FMR1Q06787 632 aaKnown RBP eCLIP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 ATG9AQ7Z3C6 839 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 NMRK2Q9NPI5 230 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 WWOXQ9NZC7 414 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 DAB1O75553 588 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 SPRP35270 261 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-206ENST00000429895 POU4F1Q01851 419 aa16.06■□□□□ 0.16
PTPRF-206ENST00000429895 SREBF2Q12772 1141 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms