RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TRIM9Q9C026 710 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 EFR3BQ9Y2G0 817 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 CACNA1SQ13698 1873 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 NDC80O14777 642 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 SLC37A4O43826 429 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 SORBS3O60504 671 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 HEXIM1O94992 359 aaKnown RBP10.32□□□□□ -0.76
USP54-205ENST00000424265 AP3M2P53677 418 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 PRKCEQ02156 737 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 GSTM4Q03013 218 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 KCNA1Q09470 495 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 C15orf59Q2T9L4 293 aaPredicted RBP10.32□□□□□ -0.76
USP54-205ENST00000424265 PRPF18Q99633 342 aaKnown RBP10.32□□□□□ -0.76
USP54-205ENST00000424265 LRRC1Q9BTT6 524 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 TACC3Q9Y6A5 838 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 NR2F2P24468 414 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 APLP1P51693 650 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 TINF2Q9BSI4 451 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 CEP44Q9C0F1 390 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 KCNMB3Q9NPA1 279 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 ADAM22Q9P0K1 906 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 PASKQ96RG2 1323 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 A6NJR5 290 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 A8MUI8 341 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 CCR3P51677 355 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 MAN2A1Q16706 1144 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 TRAPPC11Q7Z392 1133 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 CALML6Q8TD86 181 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 MRPL4Q9BYD3 311 aaKnown RBP10.32□□□□□ -0.76
USP54-205ENST00000424265 SEZ6LQ9BYH1 1024 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 DDX18Q9NVP1 670 aaKnown RBP10.32□□□□□ -0.76
USP54-205ENST00000424265 TRIM17Q9Y577 477 aa10.32□□□□□ -0.76
USP54-205ENST00000424265 COL11A2P13942 1736 aaPredicted RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 RHOBTB3O94955 611 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 IFNAR2P48551 515 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 LRIG3Q6UXM1 1119 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 AGGF1Q8N302 714 aaeCLIP10.31□□□□□ -0.76
USP54-205ENST00000424265 POLR3FQ9H1D9 316 aaPredicted RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 ZNF304Q9HCX3 659 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 DSEQ9UL01 958 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 MAPTP10636 758 aaKnown RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 TNNI1P19237 187 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 BLVRAP53004 296 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 PEX3P56589 373 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 CFAP221Q4G0U5 840 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 B3GNT6Q6ZMB0 384 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 CCNJLQ8IV13 435 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 RIBC1Q8N443 379 aaPredicted RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 CAVIN3Q969G5 261 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 HYOU1Q9Y4L1 999 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 EIF2S1P05198 315 aaKnown RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 PLS3P13797 630 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 MARK3P27448 753 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 CYP2J2P51589 502 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 SFR1Q86XK3 245 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP54-205ENST00000424265 PDZD8Q8NEN9 1154 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 MTMR9Q96QG7 549 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 ZBED2Q9BTP6 218 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 CCDC28BQ9BUN5 200 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 TOPORSQ9NS56 1045 aaPredicted RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 SELENONQ9NZV5 590 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 MORF4L1Q9UBU8 362 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 HPSEQ9Y251 543 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 PDXKO00764 312 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 GMNNO75496 209 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 CIB2O75838 187 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 PTDSS1P48651 473 aaKnown RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 RAD9BQ6WBX8 426 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 MARK2Q7KZI7 788 aaKnown RBP10.31□□□□□ -0.76
USP54-205ENST00000424265 NOX5Q96PH1 765 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 FZD1Q9UP38 647 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 DOCK2Q92608 1830 aa10.31□□□□□ -0.76
USP54-205ENST00000424265 PGK2P07205 417 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 C6orf222P0C671 652 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 CCDC159P0C7I6 412 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TMEM191BP0C7N4 346 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 GEMIN4P57678 1058 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 ACVR2BQ13705 512 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 KNOP1Q1ED39 458 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 RASAL3Q86YV0 1011 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TSEN2Q8NCE0 465 aaKnown RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 NAT14Q8WUY8 206 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 GLT1D1Q96MS3 346 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 PSMB7Q99436 277 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 RSPH9Q9H1X1 276 aaPredicted RBP10.3□□□□□ -0.76
USP54-205ENST00000424265 TIMMDC1Q9NPL8 285 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TUBE1Q9UJT0 475 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 LRRC42Q9Y546 428 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TAF1P21675 1872 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 FAM237AA0A1B0GTK4 181 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 SLC10A3P09131 477 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 ARP10275 920 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 ICAM3P32942 547 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 EMC2Q15006 297 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 LIN52Q52LA3 116 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 CATSPER4Q7RTX7 472 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 IFNL1Q8IU54 200 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 GSDMBQ8TAX9 411 aa10.3□□□□□ -0.76
USP54-205ENST00000424265 TNFRSF25Q93038 417 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms