RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 MBTPS2O43462 519 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 HCRTO43612 131 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 STAU1O95793 577 aaKnown RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 IL9P15248 144 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 ATICP31939 592 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 GTF2H1P32780 548 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 MCCD1P59942 119 aaPredicted RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 TNNC1P63316 161 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 MRPS5P82675 430 aaKnown RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 STX1AQ16623 288 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 AAK1Q2M2I8 961 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 SOWAHAQ2M3V2 549 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 KLHL40Q2TBA0 621 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 LIN9Q5TKA1 542 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 SPOPLQ6IQ16 392 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 PTCRAQ6ISU1 281 aaPredicted RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 SASS6Q6UVJ0 657 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 SCARA5Q6ZMJ2 495 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 C11orf57Q6ZUT1 292 aaPredicted RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 FRMD5Q7Z6J6 570 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 KBTBD7Q8WVZ9 684 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 SLC35C1Q96A29 364 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 MS4A3Q96HJ5 214 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 CNOT6LQ96LI5 555 aaKnown RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 ASB2Q96Q27 587 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 MMS19Q96T76 1030 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 PI4K2AQ9BTU6 479 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 SMYD3Q9H7B4 428 aa13.39□□□□□ -0.27
SKA1-203ENST00000417656 METTL14Q9HCE5 456 aaKnown RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 NXF1Q9UBU9 619 aaKnown RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 USP15Q9Y4E8 981 aaPredicted RBP13.39□□□□□ -0.27
SKA1-203ENST00000417656 STX10O60499 249 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 LRRN2O75325 713 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 RFPL2O75678 378 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 FGFR1OPO95684 399 aaKnown RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 C1RP00736 705 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 C8AP07357 584 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 WEE2P0C1S8 567 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 HOXB8P17481 243 aaPredicted RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 PTMSP20962 102 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 ACAT1P24752 427 aaKnown RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 ERCC5P28715 1186 aaPredicted RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 RAP1GAPP47736 663 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 CDR1P51861 262 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 MYL7Q01449 175 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 WDR72Q3MJ13 1102 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 CBWD6Q4V339 395 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 ZNF667Q5HYK9 610 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 CBWD3Q5JTY5 395 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 CBWD5Q5RIA9 395 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 KRT39Q6A163 491 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 ASTLQ6HA08 431 aaPredicted RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 ELMSAN1Q6PJG2 1045 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 TMC5Q6UXY8 1006 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 RNF19BQ6ZMZ0 732 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 TMEM86AQ8N2M4 240 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 SLC7A14Q8TBB6 771 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 PGLYRP2Q96PD5 576 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 MRPL45Q9BRJ2 306 aaKnown RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 OXCT2Q9BYC2 517 aaPredicted RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 S1PR5Q9H228 398 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 PLEKHA4Q9H4M7 779 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 VRTNQ9H8Y1 702 aa13.38□□□□□ -0.27
SKA1-203ENST00000417656 DDX43Q9NXZ2 648 aaKnown RBP13.38□□□□□ -0.27
SKA1-203ENST00000417656 ZMYND10O75800 440 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 ABLIM3O94929 683 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 VNN2O95498 520 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 GNA14O95837 355 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 ASS1P00966 412 aaKnown RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 CCDC192P0DO97 292 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 WARSP23381 471 aaKnown RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 MARSP56192 900 aaKnown RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 NOP14P78316 857 aaKnown RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 TPD52L1Q16890 204 aaPredicted RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 CCDC142Q17RM4 750 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 SLC39A12Q504Y0 691 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 LIMS2Q7Z4I7 341 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 TRIM59Q8IWR1 403 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 THEM5Q8N1Q8 247 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 ZNF461Q8TAF7 563 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 SPATA18Q8TC71 538 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 HDAC7Q8WUI4 952 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 SEMA4DQ92854 862 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 IMPG2Q9BZV3 1241 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 ZCWPW1Q9H0M4 648 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 SDCBP2Q9H190 292 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 APOBEC3GQ9HC16 384 aaKnown RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 ANO10Q9NW15 660 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 DPP7Q9UHL4 492 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 NME7Q9Y5B8 376 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 TCF20Q9UGU0 1960 aaKnown RBP13.37□□□□□ -0.27
SKA1-203ENST00000417656 UNC80Q8N2C7 3258 aa13.37□□□□□ -0.27
SKA1-203ENST00000417656 MTMR11A4FU01 709 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 PRRG1O14668 218 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 GABRDO14764 452 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 SEC24AO95486 1093 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ATF2P15336 505 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ASPAP45381 313 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 FMO5P49326 533 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms