RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ELF1P32519 619 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 SNRPFP62306 86 aaKnown RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 ROR1Q01973 937 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 RCN2Q14257 317 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 LLGL2Q6P1M3 1020 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 KIAA0319LQ8IZA0 1049 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 PDCD6IPQ8WUM4 868 aaKnown RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 CLEC4DQ8WXI8 215 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 RUBCNQ92622 972 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 L3MBTL3Q96JM7 780 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 VCXQ9H320 206 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 PRDM5Q9NQX1 630 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 GTPBP10A4D1E9 387 aaKnown RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 M0R2N6 131 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF862O60290 1169 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 IL18RAPO95256 599 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 LGALS2P05162 132 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 HSD17B3P37058 310 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 GRIK1P39086 918 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 MDH1P40925 334 aaKnown RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 SLC1A1P43005 524 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 OR1G1P47890 313 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 FBXO25Q8TCJ0 367 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 USP33Q8TEY7 942 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 KRT35Q92764 455 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 N4BP2L2Q92802 583 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-204ENST00000412568 ZBED2Q9BTP6 218 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 SLC13A1Q9BZW2 595 aa11.77□□□□□ -0.53
PTPRF-204ENST00000412568 ACO1P21399 889 aaKnown RBP11.76□□□□□ -0.53
PTPRF-204ENST00000412568 BYSLQ13895 437 aaKnown RBP11.76□□□□□ -0.53
PTPRF-204ENST00000412568 SLC29A2Q14542 456 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 PRPSAP1Q14558 356 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 PSMD6Q15008 389 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 MUM1Q2TAK8 710 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF484Q5JVG2 852 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 APTXQ7Z2E3 356 aaKnown RBP11.76□□□□□ -0.53
PTPRF-204ENST00000412568 SAMD3Q8N6K7 520 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 CCHCR1Q8TD31 782 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 LRRC15Q8TF66 581 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 INPP4AQ96PE3 977 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-204ENST00000412568 SPON2Q9BUD6 331 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.76□□□□□ -0.536e-6■□□□□ 10.5
PTPRF-204ENST00000412568 SYNPO2Q9UMS6 1093 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 C17orf102A2RUQ5 167 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 RRN3P2A6NIE6 340 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 EIF3HO15372 352 aaKnown RBP eCLIP11.76□□□□□ -0.534e-7■□□□□ 10.7
PTPRF-204ENST00000412568 ATN1P54259 1190 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-204ENST00000412568 ACVR2BQ13705 512 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 CAPSQ13938 189 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 MAP7D1Q3KQU3 841 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 SMC1BQ8NDV3 1235 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 DEPDC1BQ8WUY9 529 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 BSNDQ8WZ55 320 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 KLHL29Q96CT2 875 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 GIPC1O14908 333 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 NKRFO15226 690 aaKnown RBP eCLIP11.76□□□□□ -0.532e-6■■■■□ 21.8
PTPRF-204ENST00000412568 ATP9BO43861 1147 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 PGK1P00558 417 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 SULT1E1P49888 294 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 CPT1AP50416 773 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 EFHC2Q5JST6 749 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 EEF1DP3Q658K8 133 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 USP50Q70EL3 339 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-204ENST00000412568 CCT8L2Q96SF2 557 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 KATNAL1Q9BW62 490 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 ABHD16BQ9H3Z7 469 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 SLC12A6Q9UHW9 1150 aa11.76□□□□□ -0.53
PTPRF-204ENST00000412568 CASTOR2A6NHX0 329 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 LACTBL1A8MY62 500 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 HOXD10P28358 340 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 LSP1P33241 339 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 RGS2P41220 211 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 ITGA8P53708 1063 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 GTF2BQ00403 316 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 CXCL17Q6UXB2 119 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 SRLQ86TD4 932 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 TLK2Q86UE8 772 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 FAM71DQ8N9W8 422 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 RAB3IL1Q8TBN0 382 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 MIPOL1Q8TD10 442 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 GANQ9H2C0 597 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 PSD3Q9NYI0 1048 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 GAS2O43903 313 aaKnown RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 TLR2O60603 784 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 LPXNO60711 386 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 FAM153BP0C7A2 387 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 MMP14P50281 582 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 PIGHQ14442 188 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 FAM153CQ494X1 144 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 BTBD8Q5XKL5 378 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF449Q6P9G9 518 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 LBX2Q6XYB7 198 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 RCOR2Q8IZ40 523 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.75□□□□□ -0.538e-7■■■■■ 32.1
PTPRF-204ENST00000412568 CCT6BQ92526 530 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 GLT1D1Q96MS3 346 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 FAM153AQ9UHL3 310 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 ALS2Q96Q42 1657 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 SPATA31C2B4DYI2 1134 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms