RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PRDM4Q9UKN5 801 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 C15orf38-AP3S2A0A0A6YYH1 394 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 USP27XA6NNY8 438 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 RARGP13631 454 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ACTR2P61160 394 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 TYSND1Q2T9J0 566 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ARPINQ7Z6K5 226 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 PACS2Q86VP3 889 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 FOPNLQ96NB1 174 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 PRELID1Q9Y255 219 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 LBRQ14739 615 aaKnown RBP13.44□□□□□ -0.26
COL6A3-206ENST00000409809 RNF217Q8TC41 542 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 MLXIPQ9HAP2 919 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 GRIK1P39086 918 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 NPEPPSP55786 919 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 LGALS3BPQ08380 585 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 AASDHPPTQ9NRN7 309 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 NCKAP5LQ9HCH0 1330 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 DDX39AO00148 427 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ACLYP53396 1101 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 LRRC6Q86X45 466 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 METTL13Q8N6R0 699 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 AKAP7Q9P0M2 348 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 PHTF1Q9UMS5 762 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 RYBPQ8N488 228 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 FAM149B1Q96BN6 582 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 CYP39A1Q9NYL5 469 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 RAB21Q9UL25 225 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF846Q147U1 533 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 FUKQ8N0W3 1084 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 SUPT20HQ8NEM7 779 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF577Q9BSK1 485 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 TRMT6Q9UJA5 497 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 TMA7Q9Y2S6 64 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 MYO18AQ92614 2054 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ANXA1P04083 346 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 USP11P51784 963 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 HK2P52789 917 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 BTKQ06187 659 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 KNOP1Q1ED39 458 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 C6orf10Q5SRN2 563 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 MIGA2Q7L4E1 593 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 SENP7Q9BQF6 1050 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 C17orf80Q9BSJ5 609 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 VTI1BQ9UEU0 232 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ANXA6P08133 673 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 MYL4P12829 197 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ACAT1P24752 427 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 CYP4Z2PQ8N1L4 340 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 IFT43Q96FT9 208 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 C6orf203Q9P0P8 240 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 SUGT1Q9Y2Z0 365 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF23P17027 643 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 STILQ15468 1287 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 HABP4Q5JVS0 413 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 JAMLQ86YT9 394 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 TMIEQ8NEW7 156 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 MAPK7Q13164 816 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF618Q5T7W0 954 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 CDC73Q6P1J9 531 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 NET1Q7Z628 596 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 PPIL6Q8IXY8 311 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 SYTL5Q8TDW5 730 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ECSITQ9BQ95 431 aa13.43□□□□□ -0.26
COL6A3-206ENST00000409809 NOL6Q9H6R4 1146 aaKnown RBP13.43□□□□□ -0.26
COL6A3-206ENST00000409809 ZFYVE16Q7Z3T8 1539 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 MEI4A8MW99 385 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 MYO1GB0I1T2 1018 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 FAM83EQ2M2I3 478 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 ACTRT1Q8TDG2 376 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 ARHGEF40Q8TER5 1519 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 PIPSLA2A3N6 862 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 CTSWP56202 376 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 EDRF1Q3B7T1 1238 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 PALB2Q86YC2 1186 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 OR7A2PQ8NGA2 310 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 PHACTR1Q9C0D0 580 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 VTA1Q9NP79 307 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 SRGNP10124 158 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 OTUD4Q01804 1114 aaKnown RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 PTK6Q13882 451 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 NUP93Q8N1F7 819 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 STN1Q9H668 368 aaKnown RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 RPRD1BQ9NQG5 326 aaKnown RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 NAA20P61599 178 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 POU5F1BQ06416 359 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 TSTA3Q13630 321 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 EFHC2Q5JST6 749 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 CACHD1Q5VU97 1274 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 WNK4Q96J92 1243 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 VPS4BO75351 444 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 PABPC4Q13310 644 aaKnown RBP eCLIP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 RIPK1Q13546 671 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 TSGA10IPQ3SY00 556 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 CDC26Q8NHZ8 85 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 ADD3Q9UEY8 706 aaKnown RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 TIMM44O43615 452 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 TBC1D12O60347 775 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 STK4Q13043 487 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms