RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 FAM49AQ9H0Q0 323 aaPredicted RBP13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 PCIF1Q9H4Z3 704 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 SLITRK6Q9H5Y7 841 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 CWC15Q9P013 229 aaKnown RBP13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 COQ4Q9Y3A0 265 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 MICAL3Q7RTP6 2002 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 SMIM35A0A1B0GVV1 85 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 DENND3A2RUS2 1198 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 GOLGA6BA6NDN3 693 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 CEP104O60308 925 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 GPC3P51654 580 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 CLCN3P51790 818 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 BPIFB4P59827 614 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 GPC5P78333 572 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 ZXDAP98168 799 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 SNRNP35Q16560 246 aaKnown RBP13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 CTC1Q2NKJ3 1217 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 RSPH3Q86UC2 560 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 GPD1LQ8N335 351 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 LRRC71Q8N4P6 559 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 LMO3Q8TAP4 145 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 DNAJB3Q8WWF6 145 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 RUNDC3BQ96NL0 473 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 PLVAPQ9BX97 442 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 DHX33Q9H6R0 707 aaKnown RBP13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 GDF3Q9NR23 364 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 RBM12Q9NTZ6 932 aaKnown RBP13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 SEPT11Q9NVA2 429 aaKnown RBP13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 RNF216Q9NWF9 866 aaPredicted RBP13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 CALCOCO1Q9P1Z2 691 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 ADAM21Q9UKJ8 722 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 ARID2Q68CP9 1835 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 SPTBN4Q9H254 2564 aa13.78□□□□□ -0.2
SMARCB1-203ENST00000407082 IGKV6-21A0A0C4DH24 114 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 ZNF233A6NK53 670 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 LRRIQ3A6PVS8 624 aaPredicted RBP13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 FOXN3O00409 490 aaPredicted RBP13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 TBX10O75333 385 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 ERLIN2O94905 339 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 HEXIM1O94992 359 aaKnown RBP13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 BMPR1AP36894 532 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 EMC2Q15006 297 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 PHLDB3Q6NSJ2 640 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 C11orf63Q6NUN7 778 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 GJB7Q6PEY0 223 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 LEKR1Q6ZMV7 388 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 SND1Q7KZF4 910 aaKnown RBP eCLIP13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 GLYCTKQ8IVS8 523 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 KIAA0319LQ8IZA0 1049 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 NME8Q8N427 588 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 FBXL13Q8NEE6 735 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 LNX1Q8TBB1 728 aaPredicted RBP13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 SLC35G2Q8TBE7 412 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 POMGNT1Q8WZA1 660 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 EVPLQ92817 2033 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 BICD1Q96G01 975 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 HES6Q96HZ4 224 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 RPS6KC1Q96S38 1066 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 CBWD1Q9BRT8 395 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 SYT11Q9BT88 431 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 C11orf84Q9BUA3 381 aaPredicted RBP13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 ISCUQ9H1K1 167 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 CARD9Q9H257 536 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 VPS18Q9P253 973 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 TMEM59LQ9UK28 342 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 AKT3Q9Y243 479 aa13.77□□□□□ -0.21
SMARCB1-203ENST00000407082 TRIOO75962 3097 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 H0Y858 1186 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 GAS2O43903 313 aaKnown RBP13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 RPLP2P05387 115 aaKnown RBP13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 GBP1P32455 592 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 GCLMP48507 274 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 VCPP55072 806 aaKnown RBP13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 DRP2Q13474 957 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 WDR44Q5JSH3 913 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 NT5DC3Q86UY8 548 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 ZNF677Q86XU0 584 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 GPIHBP1Q8IV16 184 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 FAM71AQ8IYT1 594 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 MREGQ8N565 214 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 LINC01465Q8N7H1 131 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 PARD3BQ8TEW8 1205 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 TMEM143Q96AN5 459 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 LRRC45Q96CN5 670 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 TRIM11Q96F44 468 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 PSMB7Q99436 277 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 KRT12Q99456 494 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 OSBPL7Q9BZF2 842 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 ZMYND15Q9H091 742 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 TMEM117Q9H0C3 514 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 LMAN2LQ9H0V9 348 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 ALG13Q9NP73 1137 aaKnown RBP13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 TLR9Q9NR96 1032 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 FAM114A2Q9NRY5 505 aa13.76□□□□□ -0.21
SMARCB1-203ENST00000407082 CACNA1AO00555 2505 aa13.75□□□□□ -0.21
SMARCB1-203ENST00000407082 M0QZ92 97 aa13.75□□□□□ -0.21
SMARCB1-203ENST00000407082 KRIT1O00522 736 aa13.75□□□□□ -0.21
SMARCB1-203ENST00000407082 EXTL3O43909 919 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms