RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DNALI1O14645 258 aaPredicted RBP22.14■■□□□ 1.13
CTCF-202ENST00000401394 VNN1O95497 513 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 RFC5P40937 340 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 MKRN3Q13064 507 aaKnown RBP22.14■■□□□ 1.13
CTCF-202ENST00000401394 KPNB1Q14974 876 aaKnown RBP22.14■■□□□ 1.13
CTCF-202ENST00000401394 CLNKQ7Z7G1 428 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 ARMC2Q8NEN0 867 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 BATF3Q9NR55 127 aa22.14■■□□□ 1.13
CTCF-202ENST00000401394 DMP1Q13316 513 aaPredicted RBP22.13■■□□□ 1.13
CTCF-202ENST00000401394 CTC1Q2NKJ3 1217 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 CLEC4DQ8WXI8 215 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 WNK4Q96J92 1243 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 CEP170P1Q96L14 293 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 HEY2Q9UBP5 337 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 LTBP1Q14766 1721 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 LRRD1A4D1F6 860 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 GNA15P30679 374 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 HIRAP54198 1017 aaPredicted RBP22.13■■□□□ 1.13
CTCF-202ENST00000401394 NOMO3P69849 1222 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 MAP4K3Q8IVH8 894 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 OR5B17Q8NGF7 314 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 CFAP57Q96MR6 1250 aa22.13■■□□□ 1.13
CTCF-202ENST00000401394 DDX50Q9BQ39 737 aaKnown RBP22.13■■□□□ 1.13
CTCF-202ENST00000401394 FAM155BO75949 473 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 GLRA2P23416 452 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 SERPINB3P29508 390 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 BRDTQ58F21 947 aaPredicted RBP22.12■■□□□ 1.13
CTCF-202ENST00000401394 MFSD14AQ96MC6 490 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 NMRK1Q9NWW6 199 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 CORO1CQ9ULV4 474 aaPredicted RBP22.12■■□□□ 1.13
CTCF-202ENST00000401394 YDJCA8MPS7 323 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 E5RJQ4 531 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 PPP1R12AO14974 1030 aaPredicted RBP22.12■■□□□ 1.13
CTCF-202ENST00000401394 CYP1A1P04798 512 aaPredicted RBP22.12■■□□□ 1.13
CTCF-202ENST00000401394 CD48P09326 243 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 PSMC5P62195 406 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 RCN1Q15293 331 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 STRIP1Q5VSL9 837 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 IGDCC3Q8IVU1 814 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 SLITRK1Q96PX8 696 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 ZWILCHQ9H900 591 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 DLGAP2Q9P1A6 1054 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 TCEAL9Q9UHQ7 104 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 LRRC42Q9Y546 428 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 NUB1Q9Y5A7 615 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 PCDHB2Q9Y5E7 798 aa22.12■■□□□ 1.13
CTCF-202ENST00000401394 AP1G2O75843 785 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 RPS6P62753 249 aaKnown RBP22.11■■□□□ 1.13
CTCF-202ENST00000401394 CENPCQ03188 943 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 ORC1Q13415 861 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 MTMR2Q13614 643 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 ACSBG2Q5FVE4 666 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 TMEM154Q6P9G4 183 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 RINLQ6ZS11 566 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 RHPN2Q8IUC4 686 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 ASAP3Q8TDY4 903 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 ANKFY1Q9P2R3 1169 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 GABBR1Q9UBS5 961 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 WASF2Q9Y6W5 498 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 RAD17O75943 681 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 MMP10P09238 476 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 ACO1P21399 889 aaKnown RBP22.11■■□□□ 1.13
CTCF-202ENST00000401394 ZNF276Q8N554 614 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 PPP1R12CQ9BZL4 782 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 TTLL13PA6NNM8 815 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 AVILO75366 819 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 MAP3K6O95382 1288 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 CCDC15Q0P6D6 951 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 TAF5Q15542 800 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 C3orf62Q6ZUJ4 267 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 OGFOD1Q8N543 542 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 TMEM143Q96AN5 459 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 CLPTM1LQ96KA5 538 aa22.11■■□□□ 1.13
CTCF-202ENST00000401394 TRIM56Q9BRZ2 755 aaKnown RBP22.11■■□□□ 1.13
CTCF-202ENST00000401394 MAGEB2O15479 319 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 EDN1P05305 212 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 MAPTP10636 758 aaKnown RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 SKIV2L2P42285 1042 aaKnown RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 GCLCP48506 637 aaPredicted RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 CAV1Q03135 178 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 PTP4A2Q12974 167 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 PARP6Q2NL67 630 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 RNASEH2BQ5TBB1 312 aaKnown RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 GPD1LQ8N335 351 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 SYTL5Q8TDW5 730 aaPredicted RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 CHURC1Q8WUH1 139 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 MECRQ9BV79 373 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 BRD2P25440 801 aaKnown RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 CAP2P40123 477 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 SMAD1Q15797 465 aaKnown RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 MUM1Q2TAK8 710 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 BBS9Q3SYG4 887 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 SEPT12Q8IYM1 358 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 SCYL3Q8IZE3 742 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 AGGF1Q8N302 714 aaeCLIP22.1■■□□□ 1.13
CTCF-202ENST00000401394 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.1■■□□□ 1.13
CTCF-202ENST00000401394 TTC17Q96AE7 1141 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 CYLDQ9NQC7 956 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 RABGEF1Q9UJ41 708 aa22.1■■□□□ 1.13
CTCF-202ENST00000401394 SEC23IPQ9Y6Y8 1000 aaKnown RBP22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms