RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZNF830Q96NB3 372 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 SLC9A7Q96T83 725 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 CDX2Q99626 313 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.17■□□□□ 0.022e-6■■■■□ 23.3
SKA1-202ENST00000398452 BCO2Q9BYV7 579 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 AAASQ9NRG9 546 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 GDAP2Q9NXN4 497 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 AJAP1Q9UKB5 411 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 BARX2Q9UMQ3 279 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 SSU72P8A0A1W2PR75 194 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 CYP26A1O43174 497 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 CCP110O43303 1012 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 MED7O43513 233 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 DDHD2O94830 711 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 CD19P15391 556 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 MSNP26038 577 aaKnown RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 PRKCIP41743 596 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 GATMP50440 423 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 DEFB103AP81534 67 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 SMAD3P84022 425 aaKnown RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 DSC1Q08554 894 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 ELAVL2Q12926 359 aaKnown RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 MEA1Q16626 185 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 TMEM240Q5SV17 173 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 ZNF677Q86XU0 584 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 ZNF280BQ86YH2 543 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 GPIHBP1Q8IV16 184 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 CMTR2Q8IYT2 770 aaKnown RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 ADGRF2Q8IZF7 708 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 TMEM86AQ8N2M4 240 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 HERVK_113Q902F9 699 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 SENP8Q96LD8 212 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 ARID3AQ99856 593 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 NT5C1AQ9BXI3 368 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 TTYH1Q9H313 450 aaPredicted RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 HAUS4Q9H6D7 363 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 SMYD3Q9H7B4 428 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 NRDE2Q9H7Z3 1164 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 NHEJ1Q9H9Q4 299 aaPredicted RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 PRG3Q9Y2Y8 225 aaPredicted RBP15.16■□□□□ 0.02
SKA1-202ENST00000398452 CEP83Q9Y592 693 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.16■□□□□ 0.02
SKA1-202ENST00000398452 TET1Q8NFU7 2136 aa15.16■□□□□ 0.02
SKA1-202ENST00000398452 LAMA2P24043 3122 aaKnown RBP15.15■□□□□ 0.02
SKA1-202ENST00000398452 GRXCR1A8MXD5 290 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 A8MXQ7 604 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 TMEM189-UBE2V1I3L0A0 370 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 RBAK-RBAKDNI3L0D1 243 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 TACC1O75410 805 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 KIF4AO95239 1232 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 PNMA6AP0CW24 399 aaPredicted RBP15.15■□□□□ 0.02
SKA1-202ENST00000398452 GNA15P30679 374 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 RAP1GAPP47736 663 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 LHX1P48742 406 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 CDH8P55286 799 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 KRT83P78385 493 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 ZNF394Q53GI3 561 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 UNC93AQ86WB7 457 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 THEM5Q8N1Q8 247 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 SPATA18Q8TC71 538 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 PHOSPHO2Q8TCD6 241 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 TNIP3Q96KP6 325 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 TTC3P53804 2025 aa15.15■□□□□ 0.02
SKA1-202ENST00000398452 MICAL3Q7RTP6 2002 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 SOWAHDA6NJG2 315 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 NRP1O14786 923 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 ZSCAN12O43309 604 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 THAP12O43422 761 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 PAEPP09466 180 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 CYP11B1P15538 503 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 ATP2A2P16615 1042 aaKnown RBP15.14■□□□□ 0.01
SKA1-202ENST00000398452 LAG3P18627 525 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 GNL1P36915 607 aaPredicted RBP15.14■□□□□ 0.01
SKA1-202ENST00000398452 EIF4A3P38919 411 aaKnown RBP15.14■□□□□ 0.01
SKA1-202ENST00000398452 CCZ1BP86790 482 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 CCZ1P86791 482 aaPredicted RBP15.14■□□□□ 0.01
SKA1-202ENST00000398452 C16orf59Q7L2K0 433 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 IRF2BP2Q7Z5L9 587 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 TMEM130Q8N3G9 435 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 FIBCD1Q8N539 461 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 HASPINQ8TF76 798 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 RABGGTAQ92696 567 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 TMEM176AQ96HP8 235 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 HEXIM2Q96MH2 286 aaKnown RBP15.14■□□□□ 0.01
SKA1-202ENST00000398452 ZNF558Q96NG5 402 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 CHP1Q99653 195 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 AGPAT1Q99943 283 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 GPR88Q9GZN0 384 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 CACNG4Q9UBN1 327 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 KIAA1257Q9ULG3 409 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 INSL6Q9Y581 213 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 EPN1Q9Y6I3 576 aaPredicted RBP15.14■□□□□ 0.01
SKA1-202ENST00000398452 TRIP11Q15643 1979 aa15.14■□□□□ 0.01
SKA1-202ENST00000398452 SF3B1O75533 1304 aaKnown RBP eCLIP15.14■□□□□ 0.011e-7■■■■■ 172.3
SKA1-202ENST00000398452 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 SPTLC1O15269 473 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 CILPO75339 1184 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 GJB5O95377 273 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 CCDC175P0C221 793 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms