RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HSMCR30P0CW71 290 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 UBASH3BQ8TF42 649 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 RMDN1Q96DB5 314 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 FAM217BQ9NTX9 383 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 PRG3Q9Y2Y8 225 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 TRPC5OSA6NMA1 111 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 ZNF197O14709 1029 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 TBC1D12O60347 775 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 TNFAIP8O95379 198 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 PLEKP08567 350 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 LCP1P13796 627 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 C12orf60Q5U649 245 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 CALML6Q8TD86 181 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 C18orf8Q96DM3 657 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 TMEM47Q9BQJ4 181 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 BARHL2Q9NY43 387 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 RBAKQ9NYW8 714 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 DCDC2Q9UHG0 476 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 MOSPD1Q9UJG1 213 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 DUSP10Q9Y6W6 482 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 XDHP47989 1333 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 C3orf70A6NLC5 250 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 PDXKO00764 312 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 AQP5P55064 265 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 ERVK-24P63145 666 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 MAPK7Q13164 816 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 DCTN2Q13561 401 aaKnown RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 NEDD8Q15843 81 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 EZH2Q15910 746 aaKnown RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 SH3BP5LQ7L8J4 393 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 LRRC6Q86X45 466 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 STKLD1Q8NE28 680 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 SPATA18Q8TC71 538 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 C6orf62Q9GZU0 229 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 CACNA2D2Q9NY47 1150 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 KLHL20Q9Y2M5 609 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 PSTPIP1O43586 416 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 RALBP11234 206 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 PECAM1P16284 738 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 KIAA1841Q6NSI8 718 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 IRGCQ6NXR0 463 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 KLHL17Q6TDP4 642 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 CROCCP3Q8IVE0 287 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 GPD1LQ8N335 351 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 C19orf60Q96EN9 201 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 CLEC4MQ9H2X3 399 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 LEMD3Q9Y2U8 911 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 SYNMO15061 1565 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 LCA5LO95447 670 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 NMT1P30419 496 aaKnown RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 ORC2Q13416 577 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 DCAF4L1Q3SXM0 396 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 LMBRD2Q68DH5 695 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 LRRC8DQ7L1W4 858 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 TPCN2Q8NHX9 752 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 JADE3Q92613 823 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 RBBP8Q99708 897 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 THUMPD3Q9BV44 507 aaKnown RBP12.35□□□□□ -0.43
SYNPO-202ENST00000394243 FANCEQ9HB96 536 aa12.35□□□□□ -0.43
SYNPO-202ENST00000394243 TRIM13O60858 407 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 HUS1O60921 280 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PLIN5Q00G26 463 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ITGADQ13349 1161 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 SCN4BQ8IWT1 228 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PPIL6Q8IXY8 311 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 POLBP06746 335 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ALOX12P18054 663 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 FMO5P49326 533 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 CCT3P49368 545 aaKnown RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ALDH5A1P51649 535 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 KRT76Q01546 638 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 CENPCQ03188 943 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PREPLQ4J6C6 727 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 B3GNT6Q6ZMB0 384 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ORAI2Q96SN7 254 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 EIF2AK1Q9BQI3 630 aaKnown RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 SYTL2Q9HCH5 934 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PAK5Q9P286 719 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PDS5AQ29RF7 1337 aaKnown RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PIPSLA2A3N6 862 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 EVPLLA8MZ36 301 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 MAPK10P53779 464 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PIGHQ14442 188 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 FUKQ8N0W3 1084 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 DEPDC7Q96QD5 511 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 CDCA7Q9BWT1 371 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 MOCS2O96007 188 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 PSMB9P28065 219 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 NKX1-1Q15270 411 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 TAF2Q6P1X5 1199 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 DPP9Q86TI2 863 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 SH3KBP1Q96B97 665 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 CHORDC1Q9UHD1 332 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 TBKBP1A7MCY6 615 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 SLC16A3O15427 465 aaKnown RBP12.34□□□□□ -0.43
SYNPO-202ENST00000394243 RHOBTB3O94955 611 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 FSBPO95073 299 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 SGO1Q5FBB7 561 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 ISLR2Q6UXK2 745 aa12.34□□□□□ -0.43
SYNPO-202ENST00000394243 INTS13Q9NVM9 706 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms