RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 CYP4F22Q6NT55 531 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 BICD1Q96G01 975 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 DDX50Q9BQ39 737 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 VCXQ9H320 206 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 PICK1Q9NRD5 415 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 PCMTD2Q9NV79 361 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 RAB20Q9NX57 234 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 EXOC7Q9UPT5 735 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 MFAP3P55082 362 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 CCDC15Q0P6D6 951 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 ACVR2BQ13705 512 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 TBC1D25Q3MII6 688 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 ZNF568Q3ZCX4 644 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 HP1BP3Q5SSJ5 553 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 DSTYKQ6XUX3 929 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 CAPN12Q6ZSI9 719 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 FGD4Q96M96 766 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 NINJ2Q9NZG7 142 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 USH1CQ9Y6N9 552 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 LOXHD1Q8IVV2 1947 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 MIF4GDA9UHW6 222 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 KRT5P13647 590 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 HSPA6P17066 643 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 RFX8Q6ZV50 586 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 FBXL13Q8NEE6 735 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 NSUN6Q8TEA1 469 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 ZNF333Q96JL9 665 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 GORASP1Q9BQQ3 440 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 NUP85Q9BW27 656 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 TMEM8AQ9HCN3 771 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 JPH1Q9HDC5 661 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 CHST7Q9NS84 486 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SCOCQ9UIL1 159 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 GSTTP1A0A1W2PQM5 241 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SSR1P43307 286 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 ACTR2P61160 394 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 PRKCEQ02156 737 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 CYP24A1Q07973 514 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 RCN1Q15293 331 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SIX1Q15475 284 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 PDCD2Q16342 344 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SGSM1Q2NKQ1 1148 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 TMEM63BQ5T3F8 832 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SNX30Q5VWJ9 437 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 LLGL2Q6P1M3 1020 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 ZNF516Q92618 1163 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 TMEM143Q96AN5 459 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 TIPINQ9BVW5 301 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 E7ENQ6 273 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 KRT36O76013 467 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SSTR3P32745 418 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 DSG3P32926 999 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 BAG6P46379 1132 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SGO2Q562F6 1265 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 C4orf33Q8N1A6 199 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 ENDOVQ8N8Q3 282 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 NRG4Q8WWG1 115 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 SCG3Q8WXD2 468 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 FAM136AQ96C01 138 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 GPRASP2Q96D09 838 aa18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 NTPCRQ9BSD7 190 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-202ENST00000389805 ACOT2P49753 483 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 YARSP54577 528 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 ZNF653Q96CK0 615 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 GRAMD1AQ96CP6 724 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 MFSD14AQ96MC6 490 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 NT5C1BQ96P26 610 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 SLC9A2Q9UBY0 812 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 KIAA1217Q5T5P2 1943 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 ATP5HO75947 161 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 GPC3P51654 580 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 USP4Q13107 963 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 DRAXINQ8NBI3 349 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 ZNF564Q8TBZ8 553 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 ATP6V0A1Q93050 837 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 POLR3FQ9H1D9 316 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 CYP26B1Q9NR63 512 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 GRID1Q9ULK0 1009 aa18.68■□□□□ 0.58
SQSTM1-202ENST00000389805 RGPD3A6NKT7 1758 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 RGPD4Q7Z3J3 1758 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 FAM47DPA6NHR8 397 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 UBTFL6P0CB48 400 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 ADCY8P40145 1251 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 CACNA2D1P54289 1103 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 TGFB2P61812 414 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 CNTN2Q02246 1040 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 SCARA3Q6AZY7 606 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 SPOPLQ6IQ16 392 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 PPP1R21Q6ZMI0 780 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 ZBTB45Q96K62 511 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 MIPEPQ99797 713 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 DCLRE1BQ9H816 532 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 PDLIM7Q9NR12 457 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 DCTN4Q9UJW0 460 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 COQ4Q9Y3A0 265 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 NUMBLQ9Y6R0 609 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 GRIN3BO60391 1043 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 PSAPP07602 524 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 SERPINB4P48594 390 aa18.67■□□□□ 0.58
SQSTM1-202ENST00000389805 CUL3Q13618 768 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms