RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FHOD1Q9Y613 1164 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 LAMA3Q16787 3333 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 LAMA2P24043 3122 aaKnown RBP10.92□□□□□ -0.66
VPS53-202ENST00000389040 NRP1O14786 923 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 MOCS3O95396 460 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 PNPLA4P41247 253 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 SEZ6Q53EL9 994 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 DDX53Q86TM3 631 aaKnown RBP10.92□□□□□ -0.66
VPS53-202ENST00000389040 PARD3BQ8TEW8 1205 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 IGSF21Q96ID5 467 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ANKRD36BP1Q96IX9 119 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ALS2CR12Q96Q35 445 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 PARD6BQ9BYG5 372 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 SIX2Q9NPC8 291 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ITGA11Q9UKX5 1188 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 JRKLQ9Y4A0 524 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 BZW2Q9Y6E2 419 aaKnown RBP10.92□□□□□ -0.66
VPS53-202ENST00000389040 CAPN6Q9Y6Q1 641 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 GOLGA8IPA6NC78 632 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 GOLGA8JA6NMD2 632 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 SOX1O00570 391 aaPredicted RBP10.91□□□□□ -0.66
VPS53-202ENST00000389040 MEFVO15553 781 aaPredicted RBP10.91□□□□□ -0.66
VPS53-202ENST00000389040 FGF18O76093 207 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 ZRANB2O95218 330 aaKnown RBP eCLIP10.91□□□□□ -0.66
VPS53-202ENST00000389040 OR1G1P47890 313 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 FMO5P49326 533 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 JAM2P57087 298 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 CBX1P83916 185 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 CKAP4Q07065 602 aaKnown RBP10.91□□□□□ -0.66
VPS53-202ENST00000389040 JADE1Q6IE81 842 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 RNF10Q8N5U6 811 aaKnown RBP10.91□□□□□ -0.66
VPS53-202ENST00000389040 MSANTD4Q8NCY6 345 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 FAM212AQ96EL1 285 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 C17orf80Q9BSJ5 609 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.91□□□□□ -0.66
VPS53-202ENST00000389040 OXCT2Q9BYC2 517 aaPredicted RBP10.91□□□□□ -0.66
VPS53-202ENST00000389040 ANKZF1Q9H8Y5 726 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 NGRNQ9NPE2 291 aaKnown RBP10.91□□□□□ -0.66
VPS53-202ENST00000389040 ADAM28Q9UKQ2 775 aa10.91□□□□□ -0.66
VPS53-202ENST00000389040 PMM2O15305 246 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 SRGAP2O75044 1071 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 TADA2AO75478 443 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 B3GAT3O94766 335 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 EFEMP2O95967 443 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 C1RP00736 705 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 TNNC2P02585 160 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 TNNI1P19237 187 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 SLC11A1P49279 550 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 VAMP7P51809 220 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 PTK2Q05397 1052 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 GPM6BQ13491 265 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 IRF2BP2Q7Z5L9 587 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 LRRC52Q8N7C0 313 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 KLHL23Q8NBE8 558 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 RDH13Q8NBN7 331 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 NOX5Q96PH1 765 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 CGRRF1Q99675 332 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 PDE11AQ9HCR9 933 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 DPP3Q9NY33 737 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 FAM53CQ9NYF3 392 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 DNAJB4Q9UDY4 337 aa10.9□□□□□ -0.66
VPS53-202ENST00000389040 SF3B1O75533 1304 aaKnown RBP eCLIP10.9□□□□□ -0.661e-10■■■■■ 107
VPS53-202ENST00000389040 A0A087X0T9 212 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 PIRO00625 290 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 NFICP08651 508 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 FAM163BP0C2L3 166 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 TMEM191BP0C7N4 346 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 FAM228BP0C875 321 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 TRIM49P0CI25 452 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 TRIM49CP0CI26 452 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 ANXA13P27216 316 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 PRKCIP41743 596 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 RBP5P82980 135 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 TFAMQ00059 246 aaKnown RBP10.9□□□□□ -0.67
VPS53-202ENST00000389040 CREMQ03060 361 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 BFSP1Q12934 665 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 BRD3Q15059 726 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 GLRA4Q5JXX5 417 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 IQCEQ6IPM2 695 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 CC2D1AQ6P1N0 951 aaPredicted RBP10.9□□□□□ -0.67
VPS53-202ENST00000389040 NOA1Q8NC60 698 aaKnown RBP10.9□□□□□ -0.67
VPS53-202ENST00000389040 SPPL3Q8TCT6 385 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 ARNTL2Q8WYA1 636 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 PPP2R3CQ969Q6 453 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 LRCH3Q96II8 777 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 FAXDC2Q96IV6 333 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 RPGRIP1Q96KN7 1286 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 CAPZA3Q96KX2 299 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 MMS19Q96T76 1030 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 TTYH1Q9H313 450 aaPredicted RBP10.9□□□□□ -0.67
VPS53-202ENST00000389040 ADAMTS1Q9UHI8 967 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 SALL4Q9UJQ4 1053 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 SNX12Q9UMY4 172 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 IRAK3Q9Y616 596 aa10.9□□□□□ -0.67
VPS53-202ENST00000389040 CCDC151A5D8V7 595 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 PODXLO00592 558 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 ARHGEF15O94989 841 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 STAU1O95793 577 aaKnown RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 ITGB1P05556 798 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 ATICP31939 592 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms