RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RNPEPQ9H4A4 650 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 PFASO15067 1338 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 HOXA7P31268 230 aaPredicted RBP14.31□□□□□ -0.12
COL4A1-201ENST00000375820 TRAF7Q6Q0C0 670 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 OTOAQ7RTW8 1153 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 TRIM69Q86WT6 500 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 BLOC1S5Q8TDH9 187 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 SEC16BQ96JE7 1060 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 MAGED4Q96JG8 741 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 GIMAP4Q9NUV9 329 aa14.31□□□□□ -0.12
COL4A1-201ENST00000375820 TMEM120BA0PK00 339 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 TRAPPC3O43617 180 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CST8O60676 142 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CYP19A1P11511 503 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CLK1P49759 484 aaKnown RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 FXR1P51114 621 aaKnown RBP eCLIP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 SEC24CP53992 1094 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 FOXO4P98177 505 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 ARHGAP17Q68EM7 881 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 HASPINQ8TF76 798 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CNDP1Q96KN2 507 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 MED15Q96RN5 788 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 TMEM245Q9H330 911 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 ANKARQ7Z5J8 1434 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 RNF103O00237 685 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 HLA-DRAP01903 254 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 YY1P25490 414 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 KCNK10P57789 538 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 MAPRE1Q15691 268 aaKnown RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 SLC18A3Q16572 532 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 C16orf89Q6UX73 402 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CALR3Q96L12 384 aaKnown RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 STK33Q9BYT3 514 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 TRIM9Q9C026 710 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 PTPRHQ9HD43 1115 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 GEMIN8Q9NWZ8 242 aaKnown RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CNOT7Q9UIV1 285 aaKnown RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 NDUFB5O43674 189 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 DEAF1O75398 565 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 ATF7IP2Q5U623 682 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 ZNF669Q96BR6 464 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 TSPAN17Q96FV3 270 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 USP15Q9Y4E8 981 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 PDXKO00764 312 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 MLNP12872 115 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 MAGEA4P43358 317 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 GLRBP48167 497 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 TTC39BQ5VTQ0 682 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 ZNF280CQ8ND82 737 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 CCT7Q99832 543 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 TMEM106CQ9BVX2 250 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 SENP2Q9HC62 589 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 NMRK2Q9NPI5 230 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 EFCAB6Q5THR3 1501 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 UBXN8O00124 270 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 GRAMD1AQ96CP6 724 aa14.3□□□□□ -0.12
COL4A1-201ENST00000375820 DMAP1Q9NPF5 467 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-201ENST00000375820 LOC102724159A0A0B4J2E5 919 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 ITGB3P05106 788 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 STK4Q13043 487 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 PWP2Q15269 919 aaKnown RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 ARMC6Q6NXE6 501 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 LRRC8BQ6P9F7 803 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 TSC22D2O75157 780 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 PPP1R37O75864 691 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 AGTP01019 485 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 NUDT2P50583 147 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 POU4F1Q01851 419 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 GJC2Q5T442 439 aaPredicted RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 CENPPQ6IPU0 288 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 ANKRD49Q8WVL7 239 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 ASZ1Q8WWH4 475 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 CAAP1Q9H8G2 361 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 PCDHB8Q9UN66 801 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 RASSF9O75901 435 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 WEE1P30291 646 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 MAP3K7CLP57077 242 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 NFIXQ14938 502 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 PGS1Q32NB8 556 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 ERAP2Q6P179 960 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 FGD2Q7Z6J4 655 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 CYP4F12Q9HCS2 524 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 STXBP3O00186 592 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 CLASP2O75122 1294 aaKnown RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 TFE3P19532 575 aaPredicted RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 AP3M2P53677 418 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 SGSM1Q2NKQ1 1148 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 ANGEL2Q5VTE6 544 aaKnown RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 IFNLR1Q8IU57 520 aaPredicted RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 FLT1P17948 1338 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 RGS5O15539 181 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 NDUFB10O96000 172 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 KCNB2Q92953 911 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 THUMPD3Q9BV44 507 aaKnown RBP14.29□□□□□ -0.12
COL4A1-201ENST00000375820 PSD3Q9NYI0 1048 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 WWOXQ9NZC7 414 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 CRLS1Q9UJA2 301 aa14.29□□□□□ -0.12
COL4A1-201ENST00000375820 PCDHB7Q9Y5E2 793 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms