RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 STAT3P40763 770 aa9.69□□□□□ -0.86
VPS13A-203ENST00000360280 POU4F1Q01851 419 aa9.69□□□□□ -0.86
VPS13A-203ENST00000360280 DGKKQ5KSL6 1271 aa9.69□□□□□ -0.86
VPS13A-203ENST00000360280 SCFD2Q8WU76 684 aa9.69□□□□□ -0.86
VPS13A-203ENST00000360280 JADE3Q92613 823 aa9.69□□□□□ -0.86
VPS13A-203ENST00000360280 PHF20L1A8MW92 1017 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SNRPAP09012 282 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 GYS1P13807 737 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ATP6V1C1P21283 382 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 DUOXA2Q1HG44 320 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SIK2Q9H0K1 926 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 IL1RL2Q9HB29 575 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SNUPNO95149 360 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CHRNB3Q05901 458 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CYFIP1Q7L576 1253 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 YIPF2Q9BWQ6 316 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 OSBPL3Q9H4L5 887 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ALDH1A1P00352 501 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ERFP50548 548 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 L3MBTL3Q96JM7 780 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ALG13Q9NP73 1137 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 PI4KBQ9UBF8 816 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 GEMIN4P57678 1058 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SNX30Q5VWJ9 437 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 TRAPPC9Q96Q05 1148 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 YWHABP31946 246 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 BNIPLQ7Z465 357 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 TRAF2Q12933 501 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 DRAP1Q14919 205 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 NCK2O43639 380 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ANKS6Q68DC2 871 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 DHX40Q8IX18 779 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 RNASE11Q8TAA1 199 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 GDAQ9Y2T3 454 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CYP21A2P08686 494 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SLC18A3Q16572 532 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CYB5D1Q6P9G0 228 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 TMED8Q6PL24 325 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 PEG10Q86TG7 708 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 THUMPD3Q9BV44 507 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 HPS4Q9NQG7 708 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ING3Q9NXR8 418 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 GALNT8Q9NY28 637 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 COPG2Q9UBF2 871 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 HNMTP50135 292 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SESN2P58004 480 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 GPD1LQ8N335 351 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 TRIM39Q9HCM9 518 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 RBAKQ9NYW8 714 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 MYH3P11055 1940 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 PRELPP51888 382 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 PWP1Q13610 501 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 BTBD8Q5XKL5 378 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CENPLQ8N0S6 344 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SH3GLB1Q9Y371 365 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ATP1A1P05023 1023 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CALB2P22676 271 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ARHGEF7Q14155 803 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 ALFQ53S48 1182 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CNKSR1Q969H4 720 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 PPP1R16BQ96T49 567 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 GTF2A1LQ9UNN4 478 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 TARSP26639 723 aaKnown RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 SERPINB8P50452 374 aa9.68□□□□□ -0.86
VPS13A-203ENST00000360280 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-203ENST00000360280 E9PBE3 544 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 TSC22D1Q15714 1073 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 GSTA3Q16772 222 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 ITSN1Q15811 1721 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 H3BMM5 538 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 STILQ15468 1287 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 ZNF618Q5T7W0 954 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 ZNF483Q8TF39 744 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-203ENST00000360280 VPS33AQ96AX1 596 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 WDR35Q9P2L0 1181 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 TBC1D12O60347 775 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 MFN2O95140 757 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 CSPG5O95196 566 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 SULT1E1P49888 294 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 LPCAT2Q7L5N7 544 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 PPP2R3CQ969Q6 453 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 EIF3LQ9Y262 564 aaKnown RBP9.67□□□□□ -0.86
VPS13A-203ENST00000360280 ZNF57Q68EA5 555 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-203ENST00000360280 CHAMP1Q96JM3 812 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 C6orf62Q9GZU0 229 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-203ENST00000360280 ILKAPQ9H0C8 392 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-203ENST00000360280 RABGEF1Q9UJ41 708 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 A0A087WWV3 80 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 DYRK3O43781 588 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 TMEM79Q9BSE2 394 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 MIEF2Q96C03 454 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 BDH2Q9BUT1 245 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 KRT34O76011 436 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 CDC73Q6P1J9 531 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 ARHGAP22Q7Z5H3 698 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 C10orf53Q8N6V4 93 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 USP13Q92995 863 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-203ENST00000360280 FAM20AQ96MK3 541 aa9.67□□□□□ -0.86
VPS13A-203ENST00000360280 RAB6BQ9NRW1 208 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms