RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RPL9P32969 192 aaKnown RBP19.83■□□□□ 0.77
CLN3-206ENST00000360019 TTC3P53804 2025 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 TUSC3Q13454 348 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 CLEC16AQ2KHT3 1053 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 H2AFVQ71UI9 128 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 TTC39CQ8N584 583 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 KBTBD7Q8WVZ9 684 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 TMEM176AQ96HP8 235 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 WDR24Q96S15 920 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 INTUQ9ULD6 942 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 L1RE1Q9UN81 338 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 LAMA2P24043 3122 aaKnown RBP19.83■□□□□ 0.76
CLN3-206ENST00000360019 B4GALT3O60512 393 aa19.83■□□□□ 0.76
CLN3-206ENST00000360019 CYP1A1P04798 512 aaPredicted RBP19.83■□□□□ 0.76
CLN3-206ENST00000360019 PAEPP09466 180 aa19.83■□□□□ 0.76
CLN3-206ENST00000360019 NOMO2Q5JPE7 1267 aa19.83■□□□□ 0.76
CLN3-206ENST00000360019 PRDM5Q9NQX1 630 aaPredicted RBP19.83■□□□□ 0.76
CLN3-206ENST00000360019 PCDH10Q9P2E7 1040 aa19.83■□□□□ 0.76
CLN3-206ENST00000360019 PCDHB7Q9Y5E2 793 aa19.83■□□□□ 0.76
CLN3-206ENST00000360019 KIAA0355O15063 1070 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 RTN2O75298 545 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 TACC1O75410 805 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 TIMP1P01033 207 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 FTLP02792 175 aaPredicted RBP19.82■□□□□ 0.76
CLN3-206ENST00000360019 ZNF569Q5MCW4 686 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 ZNF280BQ86YH2 543 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 PASD1Q8IV76 773 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 SECISBP2LQ93073 1101 aaKnown RBP19.82■□□□□ 0.76
CLN3-206ENST00000360019 CYFIP2Q96F07 1278 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 DNAI1Q9UI46 699 aa19.82■□□□□ 0.76
CLN3-206ENST00000360019 DDHD2O94830 711 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 TUBB4AP04350 444 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 CD19P15391 556 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 ABCB4P21439 1286 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 RFC2P35250 354 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 ACAD10Q6JQN1 1059 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 CNKSR3Q6P9H4 555 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 TOP6BLQ8N6T0 577 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 APPL2Q8NEU8 664 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 ZNF592Q92610 1267 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 NT5C1AQ9BXI3 368 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 THAP2Q9H0W7 228 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 PDCL3Q9H2J4 239 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 TBC1D13Q9NVG8 400 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 MYO1AQ9UBC5 1043 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 CAPN6Q9Y6Q1 641 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 MICAL3Q7RTP6 2002 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 ANKRD62A6NC57 917 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 BTNL10A8MVZ5 291 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 HCRTO43612 131 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 HUS1O60921 280 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 TMEM253P0C7T8 217 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 AARSP49588 968 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-206ENST00000360019 GATMP50440 423 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 NOMO3P69849 1222 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 DSC1Q08554 894 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 CD300LGQ6UXG3 332 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 SLC35F6Q8N357 371 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 URGCPQ8TCY9 931 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 ARHGEF26Q96DR7 871 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 DDX27Q96GQ7 796 aaKnown RBP19.81■□□□□ 0.76
CLN3-206ENST00000360019 SENP8Q96LD8 212 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 UROC1Q96N76 676 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 PCDHGC3Q9UN70 934 aa19.81■□□□□ 0.76
CLN3-206ENST00000360019 CYB561D2O14569 222 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 BUB1O43683 1085 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 MOCS3O95396 460 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 CENPCQ03188 943 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 PAN2Q504Q3 1202 aaKnown RBP19.8■□□□□ 0.76
CLN3-206ENST00000360019 NAA35Q5VZE5 725 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 TRIM72Q6ZMU5 477 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLN3-206ENST00000360019 DPH6Q7L8W6 267 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 PDCL2Q8N4E4 241 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 OR6B3Q8NGW1 331 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 CPA5Q8WXQ8 436 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 CASD1Q96PB1 797 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 KANSL3Q9P2N6 904 aa19.8■□□□□ 0.76
CLN3-206ENST00000360019 F8W810 466 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 B3GAT3O94766 335 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 CSF2RAP15509 400 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 TIGD5Q53EQ6 642 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 UNC93AQ86WB7 457 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 OSTM1Q86WC4 334 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 ADGRF2Q8IZF7 708 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 CTNNBL1Q8WYA6 563 aaPredicted RBP19.79■□□□□ 0.76
CLN3-206ENST00000360019 HEXIM2Q96MH2 286 aaKnown RBP19.79■□□□□ 0.76
CLN3-206ENST00000360019 DPEP3Q9H4B8 488 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 LRFN2Q9ULH4 789 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 A8MXQ7 604 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 ITGB1P05556 798 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 VDRP11473 427 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 RAG1P15918 1043 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 WARSP23381 471 aaKnown RBP19.79■□□□□ 0.76
CLN3-206ENST00000360019 LMO2P25791 158 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 IKBKEQ14164 716 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 WSCD1Q658N2 575 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 NPAS4Q8IUM7 802 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 COLGALT2Q8IYK4 626 aa19.79■□□□□ 0.76
CLN3-206ENST00000360019 ABI1Q8IZP0 508 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms