RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 TAF13Q15543 124 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 CYP51A1Q16850 503 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 CCDC33Q8N5R6 958 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 UBA3Q8TBC4 463 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 CLUP10909 449 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 KNOP1Q1ED39 458 aaKnown RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 CLIP3Q96DZ5 547 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 DNAJC1Q96KC8 554 aaKnown RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 KCTD10Q9H3F6 313 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 ACAD9Q9H845 621 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TBC1D22BQ9NU19 505 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 CHL1O00533 1208 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 FOSL2P15408 326 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TDRD10Q5VZ19 366 aaKnown RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TMC4Q7Z404 712 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 GJB4Q9NTQ9 266 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 MYH6P13533 1939 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 DUOX2Q9NRD8 1548 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 ARID1BQ8NFD5 2236 aaPredicted RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 EEF2KO00418 725 aaKnown RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 NFRKBQ6P4R8 1299 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 INTS13Q9NVM9 706 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 RNF14Q9UBS8 474 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 STON1Q9Y6Q2 735 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 HLA-DQA2P01906 255 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TRIM49P0CI25 452 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TRIM49CP0CI26 452 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 PSMC6P62333 389 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 SNX17Q15036 470 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 MTFR1Q15390 333 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TRADDQ15628 312 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 TYW3Q6IPR3 259 aaKnown RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 WDR36Q8NI36 951 aaKnown RBP17.99■□□□□ 0.47
COL27A1-201ENST00000356083 FAM118BQ9BPY3 351 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 SESN1Q9Y6P5 492 aa17.99■□□□□ 0.47
COL27A1-201ENST00000356083 CAV1Q03135 178 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 GPD1LQ8N335 351 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 TRPC4APQ8TEL6 797 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.98■□□□□ 0.471e-7■■■□□ 16.6
COL27A1-201ENST00000356083 TSC22D4Q9Y3Q8 395 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 GNG14A0A1W2PPG7 69 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 CYP26A1O43174 497 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 PRCPP42785 496 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 DYNC1I2Q13409 638 aaKnown RBP17.98■□□□□ 0.47
COL27A1-201ENST00000356083 HASPINQ8TF76 798 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 MED15Q96RN5 788 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 KLHL31Q9H511 634 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 ESYT3A0FGR9 886 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 TPST1O60507 370 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 SCP2P22307 547 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 STIP1P31948 543 aaKnown RBP17.98■□□□□ 0.47
COL27A1-201ENST00000356083 IL6STP40189 918 aaPredicted RBP17.98■□□□□ 0.47
COL27A1-201ENST00000356083 THPOP40225 353 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 CALML6Q8TD86 181 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 NBPF9Q3BBW0 867 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 AAASQ9NRG9 546 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 RPRD2Q5VT52 1461 aaKnown RBP17.98■□□□□ 0.47
COL27A1-201ENST00000356083 SP100P23497 879 aaPredicted RBP17.98■□□□□ 0.47
COL27A1-201ENST00000356083 GGCXP38435 758 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 COASYQ13057 564 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 SNX30Q5VWJ9 437 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 MS4A14Q96JA4 679 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 RNF112Q9ULX5 631 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 CCR4P51679 360 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 STX4Q12846 297 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 CATSPERBQ9H7T0 1116 aa17.98■□□□□ 0.47
COL27A1-201ENST00000356083 CPSF4O95639 269 aaKnown RBP17.97■□□□□ 0.47
COL27A1-201ENST00000356083 PRKCBP05771 671 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 CKMP06732 381 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 MAPKAPK2P49137 400 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 STAT5BP51692 787 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 HIRAP54198 1017 aaPredicted RBP17.97■□□□□ 0.47
COL27A1-201ENST00000356083 ZSCAN18Q8TBC5 510 aaPredicted RBP17.97■□□□□ 0.47
COL27A1-201ENST00000356083 PSMC3P17980 439 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 GRAPQ13588 217 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 ZMYM1Q5SVZ6 1142 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 GRAPLQ8TC17 118 aaPredicted RBP17.97■□□□□ 0.47
COL27A1-201ENST00000356083 A0A0G2JLW4 131 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 DEFA1P59665 94 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 DEFA3P59666 94 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 NCF4Q15080 339 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 DEFB128Q7Z7B8 93 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 SERAC1Q96JX3 654 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 WNT8AQ9H1J5 351 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 TRAPPC8Q9Y2L5 1435 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 ARAP3Q8WWN8 1544 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 HNRNPRO43390 633 aaKnown RBP17.97■□□□□ 0.47
COL27A1-201ENST00000356083 ZC3H11AO75152 810 aaKnown RBP eCLIP17.97■□□□□ 0.476e-8■■□□□ 12.9
COL27A1-201ENST00000356083 DDX47Q9H0S4 455 aaKnown RBP17.97■□□□□ 0.47
COL27A1-201ENST00000356083 SLC9A8Q9Y2E8 581 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 KRT76Q01546 638 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 DENND6AQ8IWF6 608 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 GINS4Q9BRT9 223 aa17.97■□□□□ 0.47
COL27A1-201ENST00000356083 TLK2Q86UE8 772 aa17.96■□□□□ 0.47
COL27A1-201ENST00000356083 ELL3Q9HB65 397 aaPredicted RBP17.96■□□□□ 0.47
COL27A1-201ENST00000356083 EDC4Q6P2E9 1401 aaKnown RBP17.96■□□□□ 0.47
COL27A1-201ENST00000356083 FAR2Q96K12 515 aa17.96■□□□□ 0.47
COL27A1-201ENST00000356083 RAPGEF6Q8TEU7 1601 aa17.96■□□□□ 0.47
COL27A1-201ENST00000356083 ITGA3P26006 1051 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms