RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 FIBCD1Q8N539 461 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 ST13P5Q8NFI4 369 aaPredicted RBP9.83□□□□□ -0.84
USP4-202ENST00000351842 CPA5Q8WXQ8 436 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 RIN2Q8WYP3 895 aaPredicted RBP9.83□□□□□ -0.84
USP4-202ENST00000351842 ABI2Q9NYB9 513 aaPredicted RBP9.83□□□□□ -0.84
USP4-202ENST00000351842 CEP72Q9P209 647 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 DGKIO75912 1065 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 MMEP08473 750 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 GNA15P30679 374 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 GNL1P36915 607 aaPredicted RBP9.83□□□□□ -0.84
USP4-202ENST00000351842 PBX1P40424 430 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 ASPAP45381 313 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 TMC7Q7Z402 723 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 CNGA4Q8IV77 575 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 SCN4BQ8IWT1 228 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 LRRC8AQ8IWT6 810 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 LRRC43Q8N309 656 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 ZNF560Q96MR9 790 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 SEZ6LQ9BYH1 1024 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 KCNF1Q9H3M0 494 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 MUC3AQ02505 3323 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 ALPK3Q96L96 1907 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ABL1P00519 1130 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 GALTP07902 379 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 P4HA1P13674 534 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 KCNE1P15382 129 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 MDH1BQ5I0G3 518 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 TOGARAM2Q6ZUX3 1019 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 MRPL10Q7Z7H8 261 aaKnown RBP9.82□□□□□ -0.84
USP4-202ENST00000351842 PDCL2Q8N4E4 241 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 APOL5Q9BWW9 433 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 MTIF3Q9H2K0 278 aaKnown RBP9.82□□□□□ -0.84
USP4-202ENST00000351842 SYNCQ9H7C4 482 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 MYO1AQ9UBC5 1043 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 SLC27A5Q9Y2P5 690 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ANK1P16157 1881 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 A0A1W2PQC6 194 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 PER2O15055 1255 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ZBED6P86452 979 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 SV2CQ496J9 727 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 PLPP4Q5VZY2 271 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 OVOS1Q6IE37 1185 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 PDXDC1Q6P996 788 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 C15orf39Q6ZRI6 1047 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 PPM1EQ8WY54 764 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 BAP1Q92560 729 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ADAM28Q9UKQ2 775 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 SQORQ9Y6N5 450 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 MICAL3Q7RTP6 2002 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 IPO7O95373 1038 aaKnown RBP9.82□□□□□ -0.84
USP4-202ENST00000351842 GJB6O95452 261 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 TNFAIP3P21580 790 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 SOX5P35711 763 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 PDE6CP51160 858 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 YWHAHQ04917 246 aaPredicted RBP9.82□□□□□ -0.84
USP4-202ENST00000351842 ZBTB6Q15916 424 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 RTP2Q5QGT7 225 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ZNF697Q5TEC3 545 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 OSTM1Q86WC4 334 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 CD302Q8IX05 232 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 COLGALT2Q8IYK4 626 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 VPS52Q8N1B4 723 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 KLHL23Q8NBE8 558 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ATAD1Q8NBU5 361 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 ELOVL4Q9GZR5 314 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 TAS2R14Q9NYV8 317 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 CAPN11Q9UMQ6 739 aa9.82□□□□□ -0.84
USP4-202ENST00000351842 MYBPHLA2RUH7 354 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 M0QYV0 167 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 MAPK13O15264 365 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NRDCO43847 1150 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 GRAP2O75791 330 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 LLGL1Q15334 1064 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 CTXN3Q4LDR2 81 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NAA35Q5VZE5 725 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 FUT10Q6P4F1 479 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NOP9Q86U38 636 aaKnown RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 TFAP2BQ92481 460 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NDRG1Q92597 394 aaKnown RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 ZNF592Q92610 1267 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 ZNF558Q96NG5 402 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NUP58Q9BVL2 599 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 STK33Q9BYT3 514 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 MIS12Q9H081 205 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NHEJ1Q9H9Q4 299 aaPredicted RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 UBN1Q9NPG3 1134 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 ENTPD7Q9NQZ7 604 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 ARHGAP20Q9P2F6 1191 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 TRIM10Q9UDY6 481 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 WDR87Q6ZQQ6 2873 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 TDRD15B5MCY1 1934 aaKnown RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 MACROD2A1Z1Q3 448 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 TMEM110-MUSTN1A8MSY1 372 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 GOLGA8SH3BPF8 625 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 TULP2O00295 520 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 PIRO00625 290 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 PARNO95453 639 aaKnown RBP9.81□□□□□ -0.84
USP4-202ENST00000351842 GTF2F1P35269 517 aaKnown RBP eCLIP9.81□□□□□ -0.84
USP4-202ENST00000351842 FAM189BP81408 668 aa9.81□□□□□ -0.84
USP4-202ENST00000351842 NAB2Q15742 525 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms