RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 YTHDF3Q7Z739 585 aaKnown RBP16.36■□□□□ 0.21
UPF3B-202ENST00000345865 ZBTB8OSQ8IWT0 167 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 OTUD6BQ8N6M0 293 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 C3orf20Q8ND61 904 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 TCP11Q8WWU5 503 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 SEC16BQ96JE7 1060 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 SPATA33Q96N06 139 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 SLITRK1Q96PX8 696 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 PDGFCQ9NRA1 345 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 CTNNAL1Q9UBT7 734 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 TJP2Q9UDY2 1190 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 GGA2Q9UJY4 613 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 POLIQ9UNA4 740 aa16.36■□□□□ 0.21
UPF3B-202ENST00000345865 CLCN3P51790 818 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 SLC20A2Q08357 652 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 MOGSQ13724 837 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 SPRED3Q2MJR0 410 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 MPZL3Q6UWV2 235 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 ROPN1BQ9BZX4 212 aaPredicted RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 FHDC1Q9C0D6 1143 aaPredicted RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 FZD8Q9H461 694 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 ROPN1Q9HAT0 212 aaPredicted RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 CYTH4Q9UIA0 394 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 DNPEPQ9ULA0 475 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 INO80B-WBP1J3KQ70 363 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 ACKR2O00590 384 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 CSDE1O75534 798 aaKnown RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 LSM8O95777 96 aaKnown RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 TRPC3Q13507 836 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 ZNF699Q32M78 642 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 ATF7IP2Q5U623 682 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 SULF1Q8IWU6 871 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 DCPSQ96C86 337 aaKnown RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 CHMP6Q96FZ7 201 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 INO80BQ9C086 356 aaPredicted RBP16.35■□□□□ 0.21
UPF3B-202ENST00000345865 HOMER3Q9NSC5 361 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 NINJ2Q9NZG7 142 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 PPME1Q9Y570 386 aa16.35■□□□□ 0.21
UPF3B-202ENST00000345865 KIAA0754O94854 1291 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 ZSCAN5DPP0CG00 497 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CDH5P33151 784 aaPredicted RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 RAP1GAPP47736 663 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 DENND1BQ6P3S1 775 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 DNAJC24Q6P3W2 148 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 MICALCLQ6ZW33 695 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 DHX37Q8IY37 1157 aaKnown RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 TMEM35BQ8NCS4 154 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 IPO4Q8TEX9 1081 aaKnown RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 RNPEPQ9H4A4 650 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 ADARB2Q9NS39 739 aaKnown RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 NXF1Q9UBU9 619 aaKnown RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 LIASO43766 372 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 GAS2O43903 313 aaKnown RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 SLC25A27O95847 323 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CALB1P05937 261 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CXCL8P10145 99 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CETPP11597 493 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 ATF7P17544 494 aaPredicted RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CDH8P55286 799 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 RNF187Q5TA31 235 aaPredicted RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 IZUMO3Q5VZ72 239 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 EFCAB12Q6NXP0 572 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 PPP1R2P3Q6NXS1 205 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 ZNF365Q70YC5 407 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CPLX4Q7Z7G2 160 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 CROCCP2Q86T23 111 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 ERO1BQ86YB8 467 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 RCOR2Q8IZ40 523 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 PRMT1Q99873 361 aaKnown RBP16.34■□□□□ 0.21
UPF3B-202ENST00000345865 OSBPL7Q9BZF2 842 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 SIX4Q9UIU6 781 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 PCDHGC3Q9UN70 934 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 AGTPBP1Q9UPW5 1226 aa16.34■□□□□ 0.21
UPF3B-202ENST00000345865 B4GALT4O60513 344 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 KRT1P04264 644 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 ETS1P14921 441 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 IREB2P48200 963 aaKnown RBP16.33■□□□□ 0.2
UPF3B-202ENST00000345865 MBTD1Q05BQ5 628 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 ORC1Q13415 861 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 TTC31Q49AM3 519 aaPredicted RBP16.33■□□□□ 0.2
UPF3B-202ENST00000345865 PTPN20Q4JDL3 420 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 DCUN1D2Q6PH85 259 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 CYP4X1Q8N118 509 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 CCDC89Q8N998 374 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 C2orf40Q9H1Z8 148 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 CDT1Q9H211 546 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 INTS9Q9NV88 658 aaKnown RBP16.33■□□□□ 0.2
UPF3B-202ENST00000345865 GPR25O00155 361 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 EIF4BP23588 611 aaKnown RBP16.33■□□□□ 0.2
UPF3B-202ENST00000345865 PSMC4P43686 418 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 CAV1Q03135 178 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 CNGA2Q16280 664 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 P3H1Q32P28 736 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 GJC2Q5T442 439 aaPredicted RBP16.33■□□□□ 0.2
UPF3B-202ENST00000345865 ZFYVE27Q5T4F4 411 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 HIBCHQ6NVY1 386 aaPredicted RBP16.33■□□□□ 0.2
UPF3B-202ENST00000345865 SPOCD1Q6ZMY3 1216 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 ERICH1Q86X53 443 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 ARFGAP1Q8N6T3 406 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 C9orf72Q96LT7 481 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms