RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 HGSNATQ68CP4 663 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 RFX8Q6ZV50 586 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 LRRC6Q86X45 466 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 EXD1Q8NHP7 514 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 DDX27Q96GQ7 796 aaKnown RBP7.55□□□□□ -1.2
VCAN-202ENST00000342785 SIK2Q9H0K1 926 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 H3BRJ5 948 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 MAGEB2O15479 319 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 NAMPTP43490 491 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 PLCB4Q15147 1175 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 FSCBQ5H9T9 825 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 FAM83AQ86UY5 434 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 NDUFAF2Q8N183 169 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 SAMD3Q8N6K7 520 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 ETNPPLQ8TBG4 499 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 SCFD2Q8WU76 684 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 TNIP3Q96KP6 325 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 EFHD1Q9BUP0 239 aa7.55□□□□□ -1.2
VCAN-202ENST00000342785 DDX20Q9UHI6 824 aaKnown RBP7.55□□□□□ -1.2
VCAN-202ENST00000342785 SPAG6O75602 509 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 PDGFRBP09619 1106 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 LCP1P13796 627 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 SH3BGRP55822 239 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 MYL6P60660 151 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 TRADDQ15628 312 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 MYLK4Q86YV6 388 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 ABI1Q8IZP0 508 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 LNX1Q8TBB1 728 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 DTX3LQ8TDB6 740 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ZNF606Q8WXB4 792 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 NOD2Q9HC29 1040 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 SLC12A6Q9UHW9 1150 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 HACL1Q9UJ83 578 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 TRIM49D1C9J1S8 452 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ATP9BO43861 1147 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 PPP1R11O60927 126 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 TRPA1O75762 1119 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 SLC4A1P02730 911 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 SNHG28P0DPA3 235 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 KRT4P19013 534 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 EFCAB12Q6NXP0 572 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 RAB44Q7Z6P3 723 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 MREGQ8N565 214 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ZNF560Q96MR9 790 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 AGAP3Q96P47 875 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 CPSF3Q9UKF6 684 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 PCDHA3Q9Y5H8 950 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ARHGEF37A1IGU5 675 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 HBP1O60381 514 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 RARBP10826 455 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 TM4SF1P30408 202 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 CTCFP49711 727 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 ARPP19P56211 112 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 DLG4P78352 724 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 COG7P83436 770 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 OTUD4Q01804 1114 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 OCRLQ01968 901 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 STX3Q13277 289 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 PGM5Q15124 567 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 FAXCQ5TGI0 409 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 EMC1Q8N766 993 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ATXN7L3BQ96GX2 97 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 CGRRF1Q99675 332 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 WDR18Q9BV38 432 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 MRIQ9BWK5 157 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 OSBPL1AQ9BXW6 950 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 KIAA1683Q9H0B3 1180 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 PXMP2Q9NR77 195 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 NAALADL1Q9UQQ1 740 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 RIMS1Q86UR5 1692 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 IFT172Q9UG01 1749 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ADAMTS3O15072 1205 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 RIPK2O43353 540 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 MAP3K6O95382 1288 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 OVGP1Q12889 678 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 KYAT1Q16773 422 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 NBPF12Q5TAG4 269 aaPredicted RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 HPDLQ96IR7 371 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 TTYH3Q9C0H2 523 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 YIPF3Q9GZM5 350 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 IKZF4Q9H2S9 585 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 CD248Q9HCU0 757 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 METTL5Q9NRN9 209 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 CISHQ9NSE2 258 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ANKRD63C9JTQ0 380 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 HNRNPCL1O60812 293 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 CCND1P24385 295 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 RPS12P25398 132 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 ELF1P32519 619 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 CLCN3P51790 818 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 GEMIN4P57678 1058 aaKnown RBP7.54□□□□□ -1.2
VCAN-202ENST00000342785 ORC1Q13415 861 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 MAP4K3Q8IVH8 894 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 ATP6V1E2Q96A05 226 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 TMEM121Q9BTD3 319 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 DNAJC18Q9H819 358 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.54□□□□□ -1.2
VCAN-202ENST00000342785 NDE1Q9NXR1 346 aa7.54□□□□□ -1.2
VCAN-202ENST00000342785 UBOX5O94941 541 aa7.53□□□□□ -1.2
VCAN-202ENST00000342785 IL18RAPO95256 599 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms