RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FEM1CQ96JP0 617 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 UNC45AQ9H3U1 944 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CATSPERBQ9H7T0 1116 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 KLHL11Q9NVR0 708 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 GIT1Q9Y2X7 761 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 A0A0B4J269 797 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SYF2O95926 243 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 BRAFP15056 766 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SAT1P21673 171 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 MAPK10P53779 464 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 MC1RQ01726 317 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 TDGQ13569 410 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CELF3Q5SZQ8 465 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 RFX6Q8HWS3 928 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 ZFPM1Q8IX07 1006 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CDX2Q99626 313 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CINPQ9BW66 212 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SEL1LQ9UBV2 794 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 PADI3Q9ULW8 664 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SORCS3Q9UPU3 1222 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 PCDHB2Q9Y5E7 798 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 BCL9LQ86UU0 1499 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF862O60290 1169 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 IFNB1P01574 187 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 HOXA7P31268 230 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 DEKP35659 375 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 ATP5C1P36542 298 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 UBXN1Q04323 297 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 GRM4Q14833 912 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 ANKEF1Q9NU02 776 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SHROOM2Q13796 1616 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 BUB1O43683 1085 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 IGKV5-2P06315 115 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CYP2A6P11509 494 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 PLCG1P19174 1290 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 LONP1P36776 959 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SLC39A12Q504Y0 691 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 NAALADL2Q58DX5 795 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 RUFY3Q7L099 469 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CAND1Q86VP6 1230 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 FAM129AQ9BZQ8 928 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 MRPL47Q9HD33 250 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SLIT1O75093 1534 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 PDE4DIPQ5VU43 2346 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 MYO1FO00160 1098 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SLC27A2O14975 620 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CREB1P16220 341 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 RPS6KB1P23443 525 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 MAGEA9P43362 315 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 UAP1Q16222 522 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 TTC19Q6DKK2 380 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 LAYNQ6UX15 382 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 ARHGEF18Q6ZSZ5 1173 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 GMCL1P1Q8NEA9 526 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 DEPDC1BQ8WUY9 529 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CPVLQ9H3G5 476 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 LMAN1LQ9HAT1 526 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SARS2Q9NP81 518 aaKnown RBP8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CRTAC1Q9NQ79 661 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 SH3GLB2Q9NR46 395 aa8.86□□□□□ -0.99
HMGB1-203ENST00000341423 CCDC189A1A4V9 331 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 FAM193AP78312 1265 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 LBX2Q6XYB7 198 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 INTS8Q75QN2 995 aaKnown RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 RASGRP3Q8IV61 690 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 NOSTRINQ8IVI9 506 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 RAB3IPQ96QF0 476 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 NT5C1AQ9BXI3 368 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 BTBD1Q9H0C5 482 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 PUS7LQ9H0K6 701 aaKnown RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 PODXLO00592 558 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF189O75820 626 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ANXA5P08758 320 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ZSCAN22P10073 491 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 HPGDP15428 266 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 BRD2P25440 801 aaKnown RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 SIM1P81133 766 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 SHHQ15465 462 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 AMHR2Q16671 573 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 PPP6R3Q5H9R7 873 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 LYSMD4Q5XG99 296 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 GDF6Q6KF10 455 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 APOBEC3HQ6NTF7 200 aaKnown RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 FAM47EQ6ZV65 393 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 GPD1LQ8N335 351 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 MAB21L3Q8N8X9 362 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 SLC20A1Q8WUM9 679 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 FAM3CQ92520 227 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 SLC38A3Q99624 504 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ELOVL4Q9GZR5 314 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 MROH1Q8NDA8 1641 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 H3BRJ5 948 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 EOMESO95936 686 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 CSF1RP07333 972 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 HOXC12P31275 282 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 TERF1P54274 439 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 INHBCP55103 352 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 CRY2Q49AN0 593 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 TATDN1Q6P1N9 297 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms