RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ASPHQ12797 758 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 CDH18Q13634 790 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 TNS4Q8IZW8 715 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 CSGALNACT1Q8TDX6 532 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 SCFD1Q8WVM8 642 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 MCEEQ96PE7 176 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 HPSEQ9Y251 543 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 TMEM150BA6NC51 233 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 PHF20L1A8MW92 1017 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 H0Y626 953 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 ENC1O14682 589 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 SETSIPP0DME0 302 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 ITGB5P18084 799 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 RTP1P59025 263 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 FPGSQ05932 587 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 ANKS3Q6ZW76 656 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 ETNPPLQ8TBG4 499 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 SYN2Q92777 582 aaPredicted RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 ZNF518BQ9C0D4 1074 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 ELOVL4Q9GZR5 314 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 FNDC3AQ9Y2H6 1198 aaKnown RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 CKMP06732 381 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CLTBP09497 229 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CAPN2P17655 700 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CTNNA1P35221 906 aaKnown RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 PDE1BQ01064 536 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 DR1Q01658 176 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 USP41Q3LFD5 358 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 DEPDC1BQ8WUY9 529 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CFAP36Q96G28 342 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 TSSK1BQ9BXA7 367 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 PLEKHA4Q9H4M7 779 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 SLC28A3Q9HAS3 691 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 INTS13Q9NVM9 706 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CDC23Q9UJX2 597 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 BARX2Q9UMQ3 279 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 TEX33O43247 280 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 LYPLA2O95372 231 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 ADH1AP07327 375 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CLCN1P35523 988 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 RAP1GAPP47736 663 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 MAP3K7CLP57077 242 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 ZNF177Q13360 481 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 SETDB1Q15047 1291 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 ZNF296Q8WUU4 475 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 FBXL21Q9UKT6 434 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 TTLL13PA6NNM8 815 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 PAPOLAP51003 745 aaKnown RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 C1orf186Q6ZWK4 172 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CYFIP2Q96F07 1278 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CFAP57Q96MR6 1250 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 NUDCD1Q96RS6 583 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 METTL5Q9NRN9 209 aaKnown RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 RGS16O15492 202 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 PPP1R11O60927 126 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 MX2P20592 715 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 SCNN1GP51170 649 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 GUCY2FP51841 1108 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 LAMB3Q13751 1172 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 GTF2H3Q13889 308 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CAPN12Q6ZSI9 719 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 RNF25Q96BH1 459 aaPredicted RBP10.69□□□□□ -0.7
USP54-201ENST00000339859 GAD1Q99259 594 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 ATP9AO75110 1047 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 CAND2O75155 1236 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 FGF19O95750 216 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 F9P00740 461 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 RFC2P35250 354 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 HAS1Q92839 578 aa10.69□□□□□ -0.7
USP54-201ENST00000339859 KPNA7A9QM74 516 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 CCDC188H7C350 402 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 LGR5O75473 907 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 KCNA2P16389 499 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 SLC9A1P19634 815 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 PTENP60484 403 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 MYL6P60660 151 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 CENPUQ71F23 418 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 UNC45BQ8IWX7 931 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 ARHGAP42A6NI28 874 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 ARVCFO00192 962 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 ITGB3BPQ13352 177 aaPredicted RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 CCL14Q16627 93 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 DCLRE1AQ6PJP8 1040 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 ACO2Q99798 780 aaKnown RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 OXCT2Q9BYC2 517 aaPredicted RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 SSU72P8A0A1W2PR75 194 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 RNASEH1O60930 286 aaKnown RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 FGGP02679 453 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 VIMP08670 466 aaKnown RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 ACO1P21399 889 aaKnown RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 ILDR2Q71H61 639 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 C17orf53Q8N3J3 647 aaPredicted RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 SLC30A5Q8TAD4 765 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 ATRIPQ8WXE1 791 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 IL17RAQ96F46 866 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 WDCPQ9H6R7 721 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 ZNF214Q9UL59 606 aaPredicted RBP10.68□□□□□ -0.7
USP54-201ENST00000339859 SCN7AQ01118 1682 aa10.68□□□□□ -0.7
USP54-201ENST00000339859 LSM8O95777 96 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms