RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 A0A0A6YYK5 440 aaPredicted RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 ARL5CA6NH57 179 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 PIRO00625 290 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 TLR3O15455 904 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 PQBP1O60828 265 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 SLU7O95391 586 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 GJB6O95452 261 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 STAU1O95793 577 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 RPLP2P05387 115 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 RRM1P23921 792 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 MNX1P50219 401 aaPredicted RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 SCNN1GP51170 649 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CDR1P51861 262 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 NDST1P52848 882 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 NOMO3P69849 1222 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 GPC5P78333 572 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 MYO1EQ12965 1108 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 SOWAHAQ2M3V2 549 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 MMS22LQ6ZRQ5 1243 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 DPH6Q7L8W6 267 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 ZNF677Q86XU0 584 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 MCOLN2Q8IZK6 566 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 WDTC1Q8N5D0 677 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 LRRC52Q8N7C0 313 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 C1orf131Q8NDD1 294 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 DIS3LQ8TF46 1054 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 BTBD6Q96KE9 485 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 PAAF1Q9BRP4 392 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 C11orf70Q9BRQ4 267 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 TRIM7Q9C029 511 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 EHD2Q9NZN4 543 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CTTNBP2NLQ9P2B4 639 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 TJP2Q9UDY2 1190 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CNOT8Q9UFF9 292 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 CYTH4Q9UIA0 394 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 SNX12Q9UMY4 172 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 INPP5FQ9Y2H2 1132 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 A0A0U1RQF3 1178 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CASTOR2A6NHX0 329 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TMEM110-MUSTN1A8MSY1 372 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 KPNA7A9QM74 516 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 PDE2AO00408 941 aaPredicted RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 CTIFO43310 598 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 NBNO60934 754 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 POMCP01189 267 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CD4P01730 458 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 FGFR1P11362 822 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 P4HA1P13674 534 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CYP3A5P20815 502 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 GTF2F1P35269 517 aaKnown RBP eCLIP4.4□□□□□ -1.7
MCF2-201ENST00000338585 NSFP46459 744 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 TERF1P54274 439 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 YWHAEP62258 255 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 CENPCQ03188 943 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 INCA1Q0VD86 236 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 PTP4A2Q12974 167 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CCDC142Q17RM4 750 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TCTN1Q2MV58 587 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 MEI1Q5TIA1 1274 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 MON1BQ7L1V2 547 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 LRRC8DQ7L1W4 858 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 MRPL10Q7Z7H8 261 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 DAAM2Q86T65 1068 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ECHDC2Q86YB7 292 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 C12orf29Q8N999 325 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 C3orf58Q8NDZ4 430 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 KBTBD7Q8WVZ9 684 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TMEM176AQ96HP8 235 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 RPS6KC1Q96S38 1066 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 OSBPL9Q96SU4 736 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 NUP85Q9BW27 656 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 EPC1Q9H2F5 836 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 DPEP3Q9H4B8 488 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CYP3A43Q9HB55 503 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 GTF3C4Q9UKN8 822 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 BARX2Q9UMQ3 279 aaPredicted RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 SAR1BQ9Y6B6 198 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 C9IYK1 514 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 F8W810 466 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 B4GALT3O60512 393 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ZNF623O75123 536 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CAND2O75155 1236 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TADA3O75528 432 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CYP1A2P05177 515 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 PAEPP09466 180 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 PDGFRBP09619 1106 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 HSPA8P11142 646 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 SELPP16109 830 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 LMO2P25791 158 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 LRPAP1P30533 357 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 TAF6P49848 677 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 CLCNKBP51801 687 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 LILRA4P59901 499 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 MESDQ14696 234 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ERCC6LQ2NKX8 1250 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 PAN2Q504Q3 1202 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 SLFN11Q7Z7L1 901 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ACOT1Q86TX2 421 aa4.4□□□□□ -1.7
MCF2-201ENST00000338585 ZNF598Q86UK7 904 aaKnown RBP4.4□□□□□ -1.7
MCF2-201ENST00000338585 NT5DC3Q86UY8 548 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms