RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 STX19Q8N4C7 294 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 APPL1Q9UKG1 709 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 GMCL1P1Q8NEA9 526 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 RAPGEF5Q92565 580 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 USP13Q92995 863 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 TRIM51Q9BSJ1 452 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 GDF3Q9NR23 364 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 SOX13Q9UN79 622 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 APBA3O96018 575 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 LVRNQ6Q4G3 990 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 DACT3Q96B18 629 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC13A1Q9BZW2 595 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 KLHL4Q9C0H6 718 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 DBR1Q9UK59 544 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 GPR75-ASB3A0A0A6YYF3 556 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 ENO1P06733 434 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 C1QBPQ07021 282 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 NFX1Q12986 1120 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 CCNG2Q16589 344 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 PCDHGC5Q9Y5F6 944 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 RGPD8O14715 1765 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 TMEM154Q6P9G4 183 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 PALB2Q86YC2 1186 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 TMC2Q8TDI7 906 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 TEX13BQ9BXU2 312 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 EPB41L4AQ9HCS5 686 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 RIC8BQ9NVN3 520 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 GLRA3O75311 464 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 NR2C2P49116 596 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 LRRC8EQ6NSJ5 796 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 BRINP3Q76B58 766 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ILKAPQ9H0C8 392 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ABCC6O95255 1503 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TMC3Q7Z5M5 1100 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 RBBP8Q99708 897 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 NBPF3Q9H094 633 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 RNF146Q9NTX7 359 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 DNAJB2P25686 324 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ALDH18A1P54886 795 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TPI1P60174 286 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 UBXN2AP68543 259 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 KDSRQ06136 332 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 FLOT2Q14254 428 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TMEM132DQ14C87 1099 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 UBE2OQ9C0C9 1292 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 AGPAT3Q9NRZ7 376 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 MAGEB16A2A368 324 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC2A3P11169 496 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 SREBF1P36956 1147 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 PEX5P50542 639 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 DRG2P55039 364 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ACAP1Q15027 740 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 NAPEPLDQ6IQ20 393 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TAB3Q8N5C8 712 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 RBBP8NLQ8NC74 664 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 CCDC195A0A1B0GUA6 201 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ECE2O60344 883 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TSHRP16473 764 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 CIAPIN1Q6FI81 312 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 CCNYL1Q8N7R7 359 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 MCEEQ96PE7 176 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 PRMT7Q9NVM4 692 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TBX20Q9UMR3 447 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 SUPT3HO75486 399 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 THRAP10827 490 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 LRRC14Q15048 493 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 HP1BP3Q5SSJ5 553 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ULK4Q96C45 1275 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 PGBD4Q96DM1 585 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 MAGED4Q96JG8 741 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 SP110Q9HB58 689 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 PIK3CDO00329 1044 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 KITP10721 976 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 PDIA6Q15084 440 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 FAM83EQ2M2I3 478 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 CCDC153Q494R4 210 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 GPRASP2Q96D09 838 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 STN1Q9H668 368 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 TMEM260Q9NX78 707 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ENOPH1Q9UHY7 261 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 KDM1AO60341 852 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 GRIN1Q05586 938 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 CSTF3Q12996 717 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 SCARF1Q14162 830 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 EFHC1Q5JVL4 640 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 DDX17Q92841 729 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 SH3GL1Q99961 368 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 NT5C1AQ9BXI3 368 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 PCDH9Q9HC56 1237 aa10.74□□□□□ -0.69
CCDC88A-202ENST00000336838 ROBO3Q96MS0 1386 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SFI1A8K8P3 1242 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 TRAPPC3O43617 180 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 NTRK3Q16288 839 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SCUBE1Q8IWY4 988 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 DDX20Q9UHI6 824 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 ZNF839A8K0R7 811 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 CAPRIN1Q14444 709 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 DCLK2Q8N568 766 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms