RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LIMD1Q9UGP4 676 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 MAFFQ9ULX9 164 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 SNX9Q9Y5X1 595 aa17.02■□□□□ 0.31
CLN3-201ENST00000333496 MTMR11A4FU01 709 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 KINO60870 393 aaKnown RBP17.01■□□□□ 0.31
CLN3-201ENST00000333496 LRG1P02750 347 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 ASGR2P07307 311 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 NR2F2P24468 414 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 DUSP4Q13115 394 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 COBLL1Q53SF7 1204 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 CEP135Q66GS9 1140 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 CENPPQ6IPU0 288 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 GET4Q7L5D6 327 aaPredicted RBP17.01■□□□□ 0.31
CLN3-201ENST00000333496 LIMS2Q7Z4I7 341 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 TTC9BQ8N6N2 239 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 ATAD1Q8NBU5 361 aa17.01■□□□□ 0.31
CLN3-201ENST00000333496 PTPRDP23468 1912 aa17■□□□□ 0.31
CLN3-201ENST00000333496 HUS1O60921 280 aa17■□□□□ 0.31
CLN3-201ENST00000333496 SMC2O95347 1197 aa17■□□□□ 0.31
CLN3-201ENST00000333496 C4BPAP04003 597 aaKnown RBP17■□□□□ 0.31
CLN3-201ENST00000333496 GBP2P32456 591 aaPredicted RBP17■□□□□ 0.31
CLN3-201ENST00000333496 CDR1P51861 262 aa17■□□□□ 0.31
CLN3-201ENST00000333496 PTPN21Q16825 1174 aa17■□□□□ 0.31
CLN3-201ENST00000333496 SOWAHAQ2M3V2 549 aa17■□□□□ 0.31
CLN3-201ENST00000333496 C1orf220Q5T0J3 134 aa17■□□□□ 0.31
CLN3-201ENST00000333496 OSTM1Q86WC4 334 aa17■□□□□ 0.31
CLN3-201ENST00000333496 THEM5Q8N1Q8 247 aa17■□□□□ 0.31
CLN3-201ENST00000333496 TOP6BLQ8N6T0 577 aa17■□□□□ 0.31
CLN3-201ENST00000333496 CEP72Q9P209 647 aa17■□□□□ 0.31
CLN3-201ENST00000333496 HOOK1Q9UJC3 728 aaKnown RBP17■□□□□ 0.31
CLN3-201ENST00000333496 SLC27A5Q9Y2P5 690 aa17■□□□□ 0.31
CLN3-201ENST00000333496 DENND4CQ5VZ89 1909 aa17■□□□□ 0.31
CLN3-201ENST00000333496 FAM86C2PA6NEL3 165 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 GABRDO14764 452 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 HCRTO43612 131 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 AKAP3O75969 853 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 FSHRP23945 695 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 UBE2HP62256 183 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 TWF1Q12792 350 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 MYO1EQ12965 1108 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 SLC39A12Q504Y0 691 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 TDRD10Q5VZ19 366 aaKnown RBP16.99■□□□□ 0.31
CLN3-201ENST00000333496 ISM2Q6H9L7 571 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 TMEM86AQ8N2M4 240 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 ITFG1Q8TB96 612 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 EDAQ92838 391 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 C1QTNF1Q9BXJ1 281 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 XYLT2Q9H1B5 865 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLN3-201ENST00000333496 EPS15L1Q9UBC2 864 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 MAN1B1Q9UKM7 699 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 FRMD4BQ9Y2L6 1034 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 R3HCC1Q9Y3T6 440 aaKnown RBP16.99■□□□□ 0.31
CLN3-201ENST00000333496 MAPK13O15264 365 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 RHOP08100 348 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 LAMP2P13473 410 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 PTPN2P17706 415 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 MYL6P60660 151 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 ZXDAP98168 799 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 ADAM9Q13443 819 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 SLC5A9Q2M3M2 681 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 EDRF1Q3B7T1 1238 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 PABPC1LQ4VXU2 614 aaKnown RBP16.99■□□□□ 0.31
CLN3-201ENST00000333496 POTEHQ6S545 545 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 DPH6Q7L8W6 267 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 ADGRF2Q8IZF7 708 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 TMC2Q8TDI7 906 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 KBTBD7Q8WVZ9 684 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 SMOC2Q9H3U7 446 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 TMLHEQ9NVH6 421 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 DDX43Q9NXZ2 648 aaKnown RBP16.99■□□□□ 0.31
CLN3-201ENST00000333496 YIPF1Q9Y548 306 aa16.99■□□□□ 0.31
CLN3-201ENST00000333496 GREB1Q4ZG55 1949 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 NRG2O14511 850 aaPredicted RBP16.98■□□□□ 0.31
CLN3-201ENST00000333496 GPR37L1O60883 481 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 SOAT2O75908 522 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 VNN1O95497 513 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 BMP6P22004 513 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 ACAT1P24752 427 aaKnown RBP16.98■□□□□ 0.31
CLN3-201ENST00000333496 PMS1P54277 932 aaKnown RBP16.98■□□□□ 0.31
CLN3-201ENST00000333496 SPATA18Q8TC71 538 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 FGF13Q92913 245 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 EEF2KMTQ96G04 330 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 PKMYT1Q99640 499 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 ACBD6Q9BR61 282 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 CORO1BQ9BR76 489 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 DNAJC25Q9H1X3 360 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 KCNK12Q9HB15 430 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 AVENQ9NQS1 362 aaPredicted RBP16.98■□□□□ 0.31
CLN3-201ENST00000333496 SORCS3Q9UPU3 1222 aa16.98■□□□□ 0.31
CLN3-201ENST00000333496 OBSL1O75147 1896 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 STAU1O95793 577 aaKnown RBP16.97■□□□□ 0.31
CLN3-201ENST00000333496 CD44P16070 742 aaKnown RBP16.97■□□□□ 0.31
CLN3-201ENST00000333496 RPL13P26373 211 aaKnown RBP16.97■□□□□ 0.31
CLN3-201ENST00000333496 AP3M2P53677 418 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 CCDC142Q17RM4 750 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 ZACNQ401N2 412 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 PRSS36Q5K4E3 855 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 CLEC17AQ6ZS10 378 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 HS6ST3Q8IZP7 471 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms