RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 FAM84AQ96KN4 292 aa15.06■□□□□ 0
LIMS1-201ENST00000332345 RPGRIP1Q96KN7 1286 aa15.06■□□□□ 0
LIMS1-201ENST00000332345 MKNK1Q9BUB5 465 aa15.06■□□□□ 0
LIMS1-201ENST00000332345 GZF1Q9H116 711 aaPredicted RBP15.06■□□□□ 0
LIMS1-201ENST00000332345 POMKQ9H5K3 350 aa15.06■□□□□ 0
LIMS1-201ENST00000332345 TTC28Q96AY4 2481 aa15.06■□□□□ 0
LIMS1-201ENST00000332345 LOC730098B7Z3J9 87 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 FAM163BP0C2L3 166 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 EPB41P11171 864 aaKnown RBP15.05■□□□□ -0
LIMS1-201ENST00000332345 LHX1P48742 406 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 SCARA3Q6AZY7 606 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 RNF19BQ6ZMZ0 732 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 DCP1BQ8IZD4 617 aaKnown RBP15.05■□□□□ -0
LIMS1-201ENST00000332345 PDCL2Q8N4E4 241 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 SYAP1Q96A49 352 aaPredicted RBP15.05■□□□□ -0
LIMS1-201ENST00000332345 ZNF707Q96C28 371 aaPredicted RBP15.05■□□□□ -0
LIMS1-201ENST00000332345 ACSF2Q96CM8 615 aaPredicted RBP15.05■□□□□ -0
LIMS1-201ENST00000332345 WDR6Q9NNW5 1121 aaKnown RBP15.05■□□□□ -0
LIMS1-201ENST00000332345 CDH22Q9UJ99 828 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 USTQ9Y2C2 406 aa15.05■□□□□ -0
LIMS1-201ENST00000332345 C2orf16Q68DN1 1984 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 BICDL2A1A5D9 508 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 PPP1R3GB7ZBB8 358 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 STX10O60499 249 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 STAU1O95793 577 aaKnown RBP15.04■□□□□ -0
LIMS1-201ENST00000332345 LRG1P02750 347 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 POU2F2P09086 479 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 BMP6P22004 513 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 MYL6P60660 151 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 DLG4P78352 724 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 MYL7Q01449 175 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 TSPY1Q01534 308 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 WDR72Q3MJ13 1102 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 TDRD10Q5VZ19 366 aaKnown RBP15.04■□□□□ -0
LIMS1-201ENST00000332345 KLHL10Q6JEL2 608 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 PLCD3Q8N3E9 789 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 MMS19Q96T76 1030 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 ACBD6Q9BR61 282 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 ZCWPW1Q9H0M4 648 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 CLSTN2Q9H4D0 955 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 L1RE1Q9UN81 338 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 POLIQ9UNA4 740 aa15.04■□□□□ -0
LIMS1-201ENST00000332345 SLC16A3O15427 465 aaKnown RBP15.03■□□□□ -0
LIMS1-201ENST00000332345 CCL16O15467 120 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 SEC24AO95486 1093 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 OR4Q2P0C623 313 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 CD44P16070 742 aaKnown RBP15.03■□□□□ -0
LIMS1-201ENST00000332345 PCSK1P29120 753 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 GTF2H1P32780 548 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 PMS1P54277 932 aaKnown RBP15.03■□□□□ -0
LIMS1-201ENST00000332345 MCCD1P59942 119 aaPredicted RBP15.03■□□□□ -0
LIMS1-201ENST00000332345 TNNC1P63316 161 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 DUSP4Q13115 394 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 NCOA4Q13772 614 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 SOWAHAQ2M3V2 549 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 SGSM1Q2NKQ1 1148 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 ZACNQ401N2 412 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 SLC39A12Q504Y0 691 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 FOXR2Q6PJQ5 311 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 SV2AQ7L0J3 742 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 OTOP3Q7RTS5 596 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 ADGRF2Q8IZF7 708 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 ELMOD1Q8N336 334 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 OR10T2Q8NGX3 314 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 C2orf15Q8WU43 125 aaKnown RBP15.03■□□□□ -0
LIMS1-201ENST00000332345 NELFBQ8WX92 580 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 EEF2KMTQ96G04 330 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 CEP63Q96MT8 703 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 PGLYRP2Q96PD5 576 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 RTP3Q9BQQ7 232 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 NUP62CLQ9H1M0 184 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 CD320Q9NPF0 282 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 DDX43Q9NXZ2 648 aaKnown RBP15.03■□□□□ -0
LIMS1-201ENST00000332345 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.03■□□□□ -0
LIMS1-201ENST00000332345 HSFX1Q9UBD0 423 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 MUC3AQ02505 3323 aa15.03■□□□□ -0
LIMS1-201ENST00000332345 GABRDO14764 452 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 CLSTN1O94985 981 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 P4HA1P13674 534 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 PTPN2P17706 415 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 ALDH1A3P47895 512 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 TUFMP49411 452 aaKnown RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 PLD1Q13393 1074 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 NFE2Q16621 373 aaPredicted RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 ZNF699Q32M78 642 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 LIMS2Q7Z4I7 341 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 GRASPQ7Z6J2 395 aaPredicted RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 FILIP1Q7Z7B0 1213 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 ZC3H3Q8IXZ2 948 aaKnown RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 TDRD5Q8NAT2 981 aaKnown RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 TAF4BQ92750 862 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 ZNF512Q96ME7 567 aaPredicted RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 TMEM209Q96SK2 561 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 XYLT2Q9H1B5 865 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 SNX25Q9H3E2 840 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 VRTNQ9H8Y1 702 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 METTL14Q9HCE5 456 aaKnown RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 NXF1Q9UBU9 619 aaKnown RBP15.02■□□□□ -0
LIMS1-201ENST00000332345 INSL5Q9Y5Q6 135 aa15.02■□□□□ -0
LIMS1-201ENST00000332345 MYO10Q9HD67 2058 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms