RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 LRRC6Q86X45 466 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 PRR11Q96HE9 360 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-201ENST00000328923 EGLN2Q96KS0 407 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 OSBPL6Q9BZF3 934 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 NYXQ9GZU5 481 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 MAN1C1Q9NR34 630 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 ARMCX3Q9UH62 379 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-201ENST00000328923 PCDHB2Q9Y5E7 798 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 CEPT1Q9Y6K0 416 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 AK5Q9Y6K8 562 aa12.47□□□□□ -0.41
SHMT2-201ENST00000328923 ZNF536O15090 1300 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 A6NL46 340 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 ADAMTS3O15072 1205 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 FOXD2O60548 495 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 PRKACBP22694 351 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 BDNFP23560 247 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 ANXA13P27216 316 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 NT5C2P49902 561 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 HIRAP54198 1017 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 IL9RQ01113 521 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 PLCB3Q01970 1234 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 ORC2Q13416 577 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 SPDYAQ5MJ70 313 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 POTEHQ6S545 545 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 NLRX1Q86UT6 975 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 SRRM1Q8IYB3 904 aaKnown RBP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 SLC25A41Q8N5S1 370 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 LZTR1Q8N653 840 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 LRRC57Q8N9N7 239 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 MIGA1Q8NAN2 632 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 PTCD2Q8WV60 388 aaKnown RBP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 PANX3Q96QZ0 392 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 ERVK-5Q9HDB9 667 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 TBK1Q9UHD2 729 aa12.46□□□□□ -0.41
SHMT2-201ENST00000328923 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 BAZ2AQ9UIF9 1905 aaKnown RBP12.46□□□□□ -0.41
SHMT2-201ENST00000328923 MAGEB6P1A0A0J9YX57 407 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TSPY2A6NKD2 308 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 NOL4O94818 638 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 ZWINTO95229 277 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 LDHBP07195 334 aaKnown RBP12.46□□□□□ -0.42
SHMT2-201ENST00000328923 OR52Z1P0C646 297 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TSPY3P0CV98 308 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TSPY8P0CW00 308 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 PCYT1AP49585 367 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 RPS3AP61247 264 aaKnown RBP12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TUBA1BP68363 451 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TSPY1Q01534 308 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 ARID5AQ03989 594 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 KYNUQ16719 465 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 FYB2Q5VWT5 728 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TUBA1AQ71U36 451 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 JAMLQ86YT9 394 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 ERI1Q8IV48 349 aaKnown RBP12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TSG101Q99816 390 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 ROPN1BQ9BZX4 212 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-201ENST00000328923 ROPN1Q9HAT0 212 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-201ENST00000328923 TBC1D23Q9NUY8 699 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 GIN1Q9NXP7 522 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 STK17AQ9UEE5 414 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 KIAA1257Q9ULG3 409 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 PCDHGA3Q9Y5H0 932 aa12.46□□□□□ -0.42
SHMT2-201ENST00000328923 CACNA1SQ13698 1873 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 UBR3Q6ZT12 1888 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 TBKBP1A7MCY6 615 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 ENO2P09104 434 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 CYP7A1P22680 504 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PPARGP37231 505 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 RPL21P46778 160 aaKnown RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 GPC3P51654 580 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PTENP60484 403 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 EFTUD2Q15029 972 aaKnown RBP eCLIP12.45□□□□□ -0.424e-8■■■■■ 44
SHMT2-201ENST00000328923 PPP2R5EQ16537 467 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PLEKHG4Q58EX7 1191 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 OGFOD2Q6N063 350 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 SDR42E1Q8WUS8 393 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 NSL1Q96IY1 281 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 CLPTM1LQ96KA5 538 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 SPZ1Q9BXG8 430 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 ANKRD2Q9GZV1 360 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 NPHS2Q9NP85 383 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 GID8Q9NWU2 228 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PPP1R1BQ9UD71 204 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 ADAMTS1Q9UHI8 967 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PCDHA6Q9UN73 950 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PCDHA8Q9Y5H6 950 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 COL1A1P02452 1464 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 EDF1O60869 148 aaKnown RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 GUCY1B2O75343 617 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PTPN2P17706 415 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PON1P27169 355 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 SERPINB6P35237 376 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 TXNRD1Q16881 649 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 KAZNQ674X7 775 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 SIGIRRQ6IA17 410 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 DHRS4L2Q6PKH6 230 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 PPP1R21Q6ZMI0 780 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 CELF1Q92879 486 aaKnown RBP12.45□□□□□ -0.42
SHMT2-201ENST00000328923 EME1Q96AY2 570 aa12.45□□□□□ -0.42
SHMT2-201ENST00000328923 ZFRQ96KR1 1074 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms