RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CYP2C9P11712 490 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 XRCC6P12956 609 aaKnown RBP eCLIP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 FDXRP22570 491 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 VIPR2P41587 438 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TM4SF4P48230 202 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 SLC11A2P49281 568 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 NEK3P51956 506 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 WNT3P56703 355 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 BEAN1Q3B7T3 259 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 SYCP2LQ5T4T6 812 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TAPT1Q6NXT6 567 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 PRRT2Q7Z6L0 340 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 CLNKQ7Z7G1 428 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 FAM46DQ8NEK8 389 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 POC1BQ8TC44 478 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 SLC25A43Q8WUT9 341 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 MAML1Q92585 1016 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TRIM43Q96BQ3 446 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 MYEOVQ96EZ4 313 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TNIP3Q96KP6 325 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 PLEKHG4BQ96PX9 1271 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TRIB1Q96RU8 372 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 HEPHQ9BQS7 1158 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 ZSWIM1Q9BR11 485 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 GALNT9Q9HCQ5 603 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 PNPLA8Q9NP80 782 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 AKIP1Q9NQ31 210 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 SACM1LQ9NTJ5 587 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TMEM74BQ9NUR3 256 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 STK32BQ9NY57 414 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 CTTNBP2NLQ9P2B4 639 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 HSFX1Q9UBD0 423 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 HESX1Q9UBX0 185 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 PHTF1Q9UMS5 762 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 TMX2Q9Y320 296 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.13□□□□□ -1.75
HMGB1-201ENST00000326004 SNX13Q9Y5W8 968 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 AATKQ6ZMQ8 1374 aa4.13□□□□□ -1.75
HMGB1-201ENST00000326004 PRAMEF33A0A0G2JMD5 474 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 PLSCR1O15162 318 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 PRAMEF10O60809 474 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 NCR1O76036 304 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 IL18RAPO95256 599 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 MYL3P08590 195 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 ATXN1LP0C7T5 689 aaKnown RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 ZKSCAN1P17029 563 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 LAG3P18627 525 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 KLRC1P26715 233 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 PTGS2P35354 604 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 PIK3CBP42338 1070 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 ANXA11P50995 505 aaKnown RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 CASP5P51878 434 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 UCP3P55916 312 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 CXADRP78310 365 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 FAM189BP81408 668 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 SLC25A3Q00325 362 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 SATB1Q01826 763 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 CTBP1Q13363 440 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 DAG1Q14118 895 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 B3GNTL1Q67FW5 361 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 DPP9Q86TI2 863 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 SESTD1Q86VW0 696 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 COLGALT2Q8IYK4 626 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 SYNE4Q8N205 404 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 DNAJC5GQ8N7S2 189 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 Q8NA96 180 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 CACTINQ8WUQ7 758 aaKnown RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 GJA10Q969M2 543 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 TBCBQ99426 244 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 MYD88Q99836 296 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 ELAC2Q9BQ52 826 aaKnown RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 TEX101Q9BY14 249 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 ZNF768Q9H5H4 540 aaKnown RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 A1CFQ9NQ94 594 aaKnown RBP4.12□□□□□ -1.75
HMGB1-201ENST00000326004 SERHLQ9NQF3 203 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 CHST12Q9NRB3 414 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 COL20A1Q9P218 1284 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 XPR1Q9UBH6 696 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 PADI4Q9UM07 663 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 FZD1Q9UP38 647 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 CORO2BQ9UQ03 480 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 SPATA31A3Q5VYP0 1347 aa4.12□□□□□ -1.75
HMGB1-201ENST00000326004 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 CCDC78A2IDD5 438 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 TMEM200CA6NKL6 621 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RASA4BC9J798 803 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 TOR1BO14657 336 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RASA4O43374 803 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 CDKL5O76039 1030 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 SUN1O94901 812 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 FOSP01100 380 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 ADRB1P08588 477 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 C1SP09871 688 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 NR4A1P22736 598 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 DDX6P26196 483 aaKnown RBP eCLIP4.11□□□□□ -1.758e-6■□□□□ 9.7
HMGB1-201ENST00000326004 PRIM2P49643 509 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 ALDH5A1P51649 535 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-201ENST00000326004 LOXL3P58215 753 aa4.11□□□□□ -1.75
HMGB1-201ENST00000326004 RHBDL3P58872 404 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms