RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 VPS36Q86VN1 386 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 GPIHBP1Q8IV16 184 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 CRIPAKQ8N1N5 446 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 RPS6KC1Q96S38 1066 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 TMEM39AQ9NV64 488 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 MIOSQ9NXC5 875 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 ADAMTS1Q9UHI8 967 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 CEP83Q9Y592 693 aa13.61□□□□□ -0.23
DDX39A-202ENST00000324340 ATXN2Q99700 1313 aaKnown RBP13.61□□□□□ -0.23
DDX39A-202ENST00000324340 DDX3XO00571 662 aaKnown RBP eCLIP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 PPEF2O14830 753 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 KIAA0355O15063 1070 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 SEC31AO94979 1220 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 IPO7O95373 1038 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 CYP2C18P33260 490 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 AFF1P51825 1210 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 GRIK3Q13003 919 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 HSP90B2PQ58FF3 399 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 BEND6Q5SZJ8 279 aaPredicted RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 C10orf76Q5T2E6 689 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 NOP9Q86U38 636 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 SLC47A2Q86VL8 602 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 PACS2Q86VP3 889 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 ZNF677Q86XU0 584 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 TTC39CQ8N584 583 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 LNX1Q8TBB1 728 aaPredicted RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 DDX1Q92499 740 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 SCLYQ96I15 445 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 ZNF560Q96MR9 790 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 AGPAT1Q99943 283 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 PPP1R12CQ9BZL4 782 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 SDCBP2Q9H190 292 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 CISHQ9NSE2 258 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 RNF19AQ9NV58 838 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 TMEM161AQ9NX61 479 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 GDAP2Q9NXN4 497 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 NXF1Q9UBU9 619 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 POLIQ9UNA4 740 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 PCDHB4Q9Y5E5 795 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 PCDHA13Q9Y5I0 950 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 TDRD15B5MCY1 1934 aaKnown RBP13.6□□□□□ -0.23
DDX39A-202ENST00000324340 SCN1AP35498 2009 aa13.6□□□□□ -0.23
DDX39A-202ENST00000324340 KRT5P13647 590 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 CHRNB2P17787 502 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 BRD2P25440 801 aaKnown RBP13.59□□□□□ -0.23
DDX39A-202ENST00000324340 RPL9P32969 192 aaKnown RBP13.59□□□□□ -0.23
DDX39A-202ENST00000324340 ARHGAP25P42331 645 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 PDE6CP51160 858 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 SCNN1GP51170 649 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 VAV2P52735 878 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 CCL23P55773 120 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 CDR2Q01850 454 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 CYP27A1Q02318 531 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 INCA1Q0VD86 236 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 TCTN1Q2MV58 587 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 TMEM270Q6UE05 265 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 LIMS2Q7Z4I7 341 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 TADA2BQ86TJ2 420 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 RBBP8NLQ8NC74 664 aaPredicted RBP13.59□□□□□ -0.23
DDX39A-202ENST00000324340 SLC20A1Q8WUM9 679 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 VWCEQ96DN2 955 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 NAGPAQ9UK23 515 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 L1RE1Q9UN81 338 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 LTBP2Q14767 1821 aa13.59□□□□□ -0.23
DDX39A-202ENST00000324340 KPNA7A9QM74 516 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 H3BQF6 201 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 PJA2O43164 708 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 TIMP1P01033 207 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 WEE2P0C1S8 567 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 FAM163BP0C2L3 166 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 TNFAIP3P21580 790 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 AARSP49588 968 aaKnown RBP eCLIP13.58□□□□□ -0.232e-6■■■■■ 30.9
DDX39A-202ENST00000324340 TAF6P49848 677 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 TNNC1P63316 161 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 GLYCTKQ8IVS8 523 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 RNF169Q8NCN4 708 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 WHAMMQ8TF30 809 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 RSPH1Q8WYR4 309 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.58□□□□□ -0.23
DDX39A-202ENST00000324340 SMYD3Q9H7B4 428 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 GOLGA2P5Q9HBQ8 144 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 ACP6Q9NPH0 428 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 BRCA2P51587 3418 aa13.58□□□□□ -0.23
DDX39A-202ENST00000324340 DNAH12Q6ZR08 3092 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 A0A0U1RQJ8 604 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.58□□□□□ -0.24
DDX39A-202ENST00000324340 TRIM43BA6NCK2 446 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 RCCD1A6NED2 376 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 SPTLC1O15269 473 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 CILPO75339 1184 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 CLSTN1O94985 981 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 PAEPP09466 180 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 GZMAP12544 262 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 CD58P19256 250 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 PAX3P23760 479 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 MAGEA1P43355 309 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 CDH8P55286 799 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 LILRA4P59901 499 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 FMO1Q01740 532 aa13.58□□□□□ -0.24
DDX39A-202ENST00000324340 TUSC3Q13454 348 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms