RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 MCRS1Q96EZ8 462 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 ANKRD36BP1Q96IX9 119 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 KXD1Q9BQD3 176 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 ZCWPW1Q9H0M4 648 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 DNAJC25Q9H1X3 360 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 AVENQ9NQS1 362 aaPredicted RBP17.57■□□□□ 0.4
LSM1-201ENST00000311351 INTS13Q9NVM9 706 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 USP25Q9UHP3 1055 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 FBXL21Q9UKT6 434 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 MAFFQ9ULX9 164 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 L1RE1Q9UN81 338 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 SLC27A5Q9Y2P5 690 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 COL4A3Q01955 1670 aa17.57■□□□□ 0.4
LSM1-201ENST00000311351 A0A1W2PQ27 194 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 A0A1W2PQ64 194 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 A0A1W2PQD8 194 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 PLA2G5P39877 138 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 KNOP1Q1ED39 458 aaKnown RBP17.56■□□□□ 0.4
LSM1-201ENST00000311351 IQCEQ6IPM2 695 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 PDZD4Q76G19 769 aaPredicted RBP17.56■□□□□ 0.4
LSM1-201ENST00000311351 SIX5Q8N196 739 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 PDCL2Q8N4E4 241 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 LRRC52Q8N7C0 313 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 XXYLT1Q8NBI6 393 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 NXPE3Q969Y0 559 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 MFSD1Q9H3U5 465 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 KIAA1586Q9HCI6 787 aa17.56■□□□□ 0.4
LSM1-201ENST00000311351 TNNC2P02585 160 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 DLATP10515 647 aaKnown RBP17.55■□□□□ 0.4
LSM1-201ENST00000311351 SRFP11831 508 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 MYL4P12829 197 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 GJA1P17302 382 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 AVPR2P30518 371 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 RBP5P82980 135 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 CYP24A1Q07973 514 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 SURF1Q15526 300 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 CWF19L1Q69YN2 538 aaKnown RBP17.55■□□□□ 0.4
LSM1-201ENST00000311351 MTSS1LQ765P7 747 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 LRRTM3Q86VH5 581 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 WDR49Q8IV35 697 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 THEM5Q8N1Q8 247 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 PRSS33Q8NF86 280 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 FLCNQ8NFG4 579 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 GPR152Q8TDT2 470 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 FAM122AQ96E09 287 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 ZNF512Q96ME7 567 aaPredicted RBP17.55■□□□□ 0.4
LSM1-201ENST00000311351 SEPT5Q99719 369 aaPredicted RBP17.55■□□□□ 0.4
LSM1-201ENST00000311351 ASAH2Q9NR71 780 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 CA14Q9ULX7 337 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 ARIH1Q9Y4X5 557 aaPredicted RBP17.55■□□□□ 0.4
LSM1-201ENST00000311351 SNX9Q9Y5X1 595 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 CACNA1HO95180 2353 aa17.55■□□□□ 0.4
LSM1-201ENST00000311351 KRBA1A5PL33 1030 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 HCRTO43612 131 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 MOSPD3O75425 235 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 RPN1P04843 607 aaKnown RBP17.54■□□□□ 0.4
LSM1-201ENST00000311351 SNRPFP62306 86 aaKnown RBP17.54■□□□□ 0.4
LSM1-201ENST00000311351 PLD1Q13393 1074 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 PSMD6Q15008 389 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 CCDC142Q17RM4 750 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 CYP4A22Q5TCH4 519 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 KRBA2Q6ZNG9 492 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 OSTM1Q86WC4 334 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 TMC8Q8IU68 726 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 C12orf56Q8IXR9 622 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 TMEM105Q8N8V8 129 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 CCDC127Q96BQ5 260 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 CGRRF1Q99675 332 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 LPIN3Q9BQK8 851 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 GZF1Q9H116 711 aaPredicted RBP17.54■□□□□ 0.4
LSM1-201ENST00000311351 TMLHEQ9NVH6 421 aa17.54■□□□□ 0.4
LSM1-201ENST00000311351 ABI2Q9NYB9 513 aaPredicted RBP17.54■□□□□ 0.4
LSM1-201ENST00000311351 EXOC3O60645 756 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 HUS1O60921 280 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 MYL1P05976 194 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 NPR3P17342 541 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 ATF6P18850 670 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 TNNI1P19237 187 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 ACAT1P24752 427 aaKnown RBP17.53■□□□□ 0.4
LSM1-201ENST00000311351 EPHB3P54753 998 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 EPHA5P54756 1037 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 DPYDQ12882 1025 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 DUOXA2Q1HG44 320 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 TRAPPC11Q7Z392 1133 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 ADGRF2Q8IZF7 708 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 SHKBP1Q8TBC3 707 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 PLEKHO2Q8TD55 490 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 LRRC3Q9BY71 257 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 KCTD10Q9H3F6 313 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 ZNF334Q9HCZ1 680 aaPredicted RBP17.53■□□□□ 0.4
LSM1-201ENST00000311351 GDAP2Q9NXN4 497 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 GDE1Q9NZC3 331 aa17.53■□□□□ 0.4
LSM1-201ENST00000311351 ZNF197O14709 1029 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 ZNF202O95125 648 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 FCARP24071 287 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 ALDH1A3P47895 512 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 CASP4P49662 377 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 GPC5P78333 572 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 NUCB2P80303 420 aa17.52■□□□□ 0.4
LSM1-201ENST00000311351 PSMD2Q13200 908 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms