RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 XKR3Q5GH77 459 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ARL6IP4Q66PJ3 421 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 SWSAP1Q6NVH7 229 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SZRD1Q7Z422 152 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 HORMAD1Q86X24 394 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 IFNL1Q8IU54 200 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ZFYVE19Q96K21 471 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 RNPC3Q96LT9 517 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 SIKE1Q9BRV8 207 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 KLHL25Q9H0H3 589 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 POLIQ9UNA4 740 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 PIK3R2O00459 728 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 FAM107AO95990 144 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 TGFB3P10600 412 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 RIOX2Q8IUF8 465 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ANKMY2Q8IV38 441 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 PASD1Q8IV76 773 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 DIABLOQ9NR28 239 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 DONSONQ9NYP3 566 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 GABBR1Q9UBS5 961 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SLC8A2Q9UPR5 921 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 NWD2Q9ULI1 1742 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 LMO7Q8WWI1 1683 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 LRRIQ3A6PVS8 624 aaPredicted RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 ENO3P13929 434 aaPredicted RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 XPAP23025 273 aaPredicted RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 EFNA5P52803 228 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 CASP7P55210 303 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ARPP19P56211 112 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 RPS6P62753 249 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 DSG1Q02413 1049 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ZCWPW2Q504Y3 356 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 CATSPERGQ6ZRH7 1159 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 UNC13DQ70J99 1090 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 DDIASQ8IXT1 998 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 KIRREL3Q8IZU9 778 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 TTC8Q8TAM2 541 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ZIM3Q96PE6 472 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 WNT8AQ9H1J5 351 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 GJB4Q9NTQ9 266 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 KLHL8Q9P2G9 620 aaPredicted RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 RSPH10B2B2RC85 870 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 UPP2O95045 317 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 RSPH10BP0C881 870 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ATXN8OSP0DMR3 200 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 CLEC4FQ8N1N0 589 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 NGRNQ9NPE2 291 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 CYP26B1Q9NR63 512 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SMG5Q9UPR3 1016 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 ZNF233A6NK53 670 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 B2RBV5 119 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 NFIBO00712 420 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 THPOP40225 353 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 LBX1P52954 281 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 TBCCQ15814 346 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 PATL1Q86TB9 770 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 MSL3Q8N5Y2 521 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 SGSM3Q96HU1 749 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 KCNK16Q96T55 309 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 KIF2CQ99661 725 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ADAM33Q9BZ11 813 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 RNPEPQ9H4A4 650 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 LRRC4Q9HBW1 653 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SENP1Q9P0U3 644 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SLC45A1Q9Y2W3 748 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 PCDHB12Q9Y5F1 795 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SFI1A8K8P3 1242 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 GAS2O43903 313 aaKnown RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 LZTS3O60299 673 aaPredicted RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 DMPKQ09013 629 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 KCNH2Q12809 1159 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TOB2Q14106 344 aaPredicted RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 MXD4Q14582 209 aaPredicted RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 KPNB1Q14974 876 aaKnown RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 TBC1D10CQ8IV04 446 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 SIX6OS1Q8N1H7 587 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TMEM169Q96HH4 297 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TINF2Q9BSI4 451 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 RUBCNLQ9H714 662 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 NEMP1O14524 444 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TLR2O60603 784 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 CTSHP09668 335 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TYK2P29597 1187 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 RFC5P40937 340 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 RAB14P61106 215 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 PLOD1Q02809 727 aaPredicted RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 C16orf89Q6UX73 402 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TLK2Q86UE8 772 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 HEATR4Q86WZ0 1026 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 THNSL1Q8IYQ7 743 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 ZNF579Q8NAF0 562 aaKnown RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 TUBGCP3Q96CW5 907 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 ACAP3Q96P50 834 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TRIM51Q9BSJ1 452 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 SLC12A6Q9UHW9 1150 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 BTBD19C9JJ37 291 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 FTLP02792 175 aaPredicted RBP8.57□□□□□ -1.04
VPS41-202ENST00000310301 PPIGQ13427 754 aaKnown RBP eCLIP8.57□□□□□ -1.048e-9■□□□□ 9.9
VPS41-202ENST00000310301 ACVR2BQ13705 512 aa8.57□□□□□ -1.04
VPS41-202ENST00000310301 TFDP2Q14188 446 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms