RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RALAP11233 206 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 EPHB2P29323 1055 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 GNA15P30679 374 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 RFC5P40937 340 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 PTENP60484 403 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 DNAL1Q4LDG9 190 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 GALNT4Q8N4A0 578 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 PPP1R36Q96LQ0 422 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 PAIP2BQ9ULR5 123 aaKnown RBP16.13■□□□□ 0.17
SHH-201ENST00000297261 CHMP2BQ9UQN3 213 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 SLC16A3O15427 465 aaKnown RBP16.13■□□□□ 0.17
SHH-201ENST00000297261 C2CD6Q53TS8 623 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 SYDE1Q6ZW31 735 aaPredicted RBP16.13■□□□□ 0.17
SHH-201ENST00000297261 C7orf31Q8N865 590 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 B4GALNT2Q8NHY0 566 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 SYTL5Q8TDW5 730 aaPredicted RBP16.13■□□□□ 0.17
SHH-201ENST00000297261 MAGEB18Q96M61 343 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 PLIN4Q96Q06 1357 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 CICQ96RK0 1608 aaPredicted RBP16.13■□□□□ 0.17
SHH-201ENST00000297261 MANSC1Q9H8J5 431 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 CBX6O95503 412 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 NPEPPSP55786 919 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 OCRLQ01968 901 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 KPNB1Q14974 876 aaKnown RBP16.13■□□□□ 0.17
SHH-201ENST00000297261 TMEM119Q4V9L6 283 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 PPP1R2P3Q6NXS1 205 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 GIT2Q14161 759 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 BZW1Q7L1Q6 419 aaKnown RBP16.12■□□□□ 0.17
SHH-201ENST00000297261 THAP11Q96EK4 314 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 SLC5A4Q9NY91 659 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 MTO1Q9Y2Z2 717 aaKnown RBP16.12■□□□□ 0.17
SHH-201ENST00000297261 TAF1P21675 1872 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 SHBGP04278 402 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 PBX1P40424 430 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 DGKZQ13574 1117 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 DAB2IPQ5VWQ8 1189 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 ATP8B4Q8TF62 1192 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 NMD3Q96D46 503 aaKnown RBP16.12■□□□□ 0.17
SHH-201ENST00000297261 PPP1R16BQ96T49 567 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 SYNPO2Q9UMS6 1093 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 SNX3O60493 162 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 PRAMEP78395 509 aa16.12■□□□□ 0.17
SHH-201ENST00000297261 PJA2O43164 708 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 FNTAP49354 379 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 ERMARDQ5T6L9 678 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 C9orf131Q5VYM1 1079 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 CCNYL1Q8N7R7 359 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 MMTAG2Q9BU76 263 aaKnown RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 MSTO1Q9BUK6 570 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 NAALADL1Q9UQQ1 740 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 RIPK2O43353 540 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 CYLC2Q14093 348 aaPredicted RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 TFDP2Q14188 446 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 PRPF39Q86UA1 669 aaKnown RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 CD302Q8IX05 232 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 IP6K2Q9UHH9 426 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 EML1O00423 815 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 TBC1D12O60347 775 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 SEC24DO94855 1032 aaPredicted RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 RPL21P46778 160 aaKnown RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 ADARB2Q9NS39 739 aaKnown RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 GOLGA8QA0A0J9YX86 632 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 GOLGA8OA6NCC3 632 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 GOLGA8NF8WBI6 632 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 KLRC4O43908 158 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 AKAP3O75969 853 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 DRD4P21917 467 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 STX3Q13277 289 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 ALKBH8Q96BT7 664 aaKnown RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 ATXN7L3BQ96GX2 97 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 NLRP4Q96MN2 994 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 FAM111AQ96PZ2 611 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 MTRQ99707 1265 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 HAUS8Q9BT25 410 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 POLR3FQ9H1D9 316 aaPredicted RBP16.11■□□□□ 0.17
SHH-201ENST00000297261 KCNMB3Q9NPA1 279 aa16.11■□□□□ 0.17
SHH-201ENST00000297261 TYK2P29597 1187 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 IZUMO2Q6UXV1 221 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 SPATA20Q8TB22 786 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 PGM2Q96G03 612 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 ZMAT2Q96NC0 199 aaKnown RBP16.1■□□□□ 0.17
SHH-201ENST00000297261 MMP19Q99542 508 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 AKT3Q9Y243 479 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 MYH13Q9UKX3 1938 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 CALB2P22676 271 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 PTK7Q13308 1070 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 SCFD1Q8WVM8 642 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 KCND2Q9NZV8 630 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 MCM8Q9UJA3 840 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 GGA2Q9UJY4 613 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 TFDP1Q14186 410 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 STK32AQ8WU08 396 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 NRBF2Q96F24 287 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 PDCD2LQ9BRP1 358 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 TRIM33Q9UPN9 1127 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 SIK3Q9Y2K2 1263 aa16.1■□□□□ 0.17
SHH-201ENST00000297261 IQCA1LA6NCM1 817 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 VWA5AO00534 786 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 GNGT2O14610 69 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 SHOX2O60902 331 aaPredicted RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms