RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 NCOA4Q13772 614 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 UBAP2LQ14157 1087 aaKnown RBP17.09■□□□□ 0.33
GPC1-201ENST00000264039 PPP6R3Q5H9R7 873 aaPredicted RBP17.09■□□□□ 0.33
GPC1-201ENST00000264039 SLFN13Q68D06 897 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 C16orf87Q6PH81 154 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 C1orf228Q6PIY5 440 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 TMPRSS6Q8IU80 811 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 RHOT1Q8IXI2 618 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 PPM1HQ9ULR3 514 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 PCDHA3Q9Y5H8 950 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 NWD1Q149M9 1564 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 CRYBG1Q9Y4K1 1723 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 MYOCOSA0A1B0GUC4 107 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 PROCP04070 461 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 CDK7P50613 346 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 BPIFB4P59827 614 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 CDK16Q00536 496 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 CDC16Q13042 620 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 PDK3Q15120 406 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 KLC3Q6P597 504 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 UTS2BQ765I0 119 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 FBXO11Q86XK2 927 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 C10orf82Q8WW14 230 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 IWS1Q96ST2 819 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 CAPN8A6NHC0 703 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 SPDYE16A6NNV3 312 aaPredicted RBP17.09■□□□□ 0.33
GPC1-201ENST00000264039 TRIM49D1C9J1S8 452 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 NDC80O14777 642 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 ITGA2BP08514 1039 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 RAG1P15918 1043 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 PMLP29590 882 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 KRT81Q14533 505 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 FAXCQ5TGI0 409 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 C3orf67Q6ZVT6 689 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 XXYLT1Q8NBI6 393 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 FBXO36Q8NEA4 188 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 PCDHB18PQ96TA0 734 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 CCT7Q99832 543 aa17.09■□□□□ 0.33
GPC1-201ENST00000264039 ANKRD33BA6NCL7 494 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 PDE1BQ01064 536 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 PEX6Q13608 980 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 MYBPC3Q14896 1274 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 PPP1R18Q6NYC8 613 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 TMEM270Q6UE05 265 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 RFX6Q8HWS3 928 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 AGBL1Q96MI9 1066 aa17.08■□□□□ 0.33
GPC1-201ENST00000264039 ASTN1O14525 1302 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 MRC1P22897 1456 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 WDR64B1ANS9 1081 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 TMED10P49755 219 aaKnown RBP17.08■□□□□ 0.32
GPC1-201ENST00000264039 MAPK10P53779 464 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 TRMT5Q32P41 509 aaKnown RBP17.08■□□□□ 0.32
GPC1-201ENST00000264039 SBK1Q52WX2 424 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 ATG16L1Q676U5 607 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 ULK2Q8IYT8 1036 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 TSPYL2Q9H2G4 693 aaPredicted RBP17.08■□□□□ 0.32
GPC1-201ENST00000264039 TOPORSQ9NS56 1045 aaPredicted RBP17.08■□□□□ 0.32
GPC1-201ENST00000264039 ATRNO75882 1429 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 TNS3Q68CZ2 1445 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 NEMP1O14524 444 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 SLC16A3O15427 465 aaKnown RBP17.08■□□□□ 0.32
GPC1-201ENST00000264039 PHEXP78562 749 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 CBX3Q13185 183 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 DNAL1Q4LDG9 190 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 MROH9Q5TGP6 573 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 DENND5BQ6ZUT9 1274 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 USP37Q86T82 979 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 ZNF384Q8TF68 577 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 ATXN7L3BQ96GX2 97 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 TMEM109Q9BVC6 243 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 TXLNGYQ9BZA5 131 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 NUF2Q9BZD4 464 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 ZNF395Q9H8N7 513 aaPredicted RBP17.08■□□□□ 0.32
GPC1-201ENST00000264039 GTF3C4Q9UKN8 822 aa17.08■□□□□ 0.32
GPC1-201ENST00000264039 PEX2P28328 305 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 CIITAP33076 1130 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 OASLQ15646 514 aaKnown RBP17.07■□□□□ 0.32
GPC1-201ENST00000264039 WDR72Q3MJ13 1102 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 CCDC92Q53HC0 331 aaPredicted RBP17.07■□□□□ 0.32
GPC1-201ENST00000264039 EFHC1Q5JVL4 640 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 SCYL2Q6P3W7 929 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 TSHZ1Q6ZSZ6 1077 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 RAPH1Q70E73 1250 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 KBTBD2Q8IY47 623 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 E2F7Q96AV8 911 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 TIPINQ9BVW5 301 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 SIX2Q9NPC8 291 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 AAASQ9NRG9 546 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 ZNF180Q9UJW8 692 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 PIK3CDO00329 1044 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 HNRNPDLO14979 420 aaKnown RBP17.07■□□□□ 0.32
GPC1-201ENST00000264039 RNASEH1O60930 286 aaKnown RBP17.07■□□□□ 0.32
GPC1-201ENST00000264039 CCDC15Q0P6D6 951 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 ACVR2BQ13705 512 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 ATP1A4Q13733 1029 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 TMEM259Q4ZIN3 620 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 KCNT1Q5JUK3 1230 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 DEFB107AQ8IZN7 70 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 CXorf38Q8TB03 319 aa17.07■□□□□ 0.32
GPC1-201ENST00000264039 SEC14L1Q92503 715 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms